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Showing metabocard for N-Ethylpropionamide (HMDB0302430)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-23 17:43:20 UTC
Update Date2021-09-23 17:43:20 UTC
HMDB IDHMDB0302430
Secondary Accession NumbersNone
Metabolite Identification
Common NameN-Ethylpropionamide
DescriptionN-ethylpropionamide is a member of the class of compounds known as secondary carboxylic acid amides. Secondary carboxylic acid amides are compounds containing a secondary carboxylic acid amide functional group, with the general structure RC(=O)N(R')H (R,R'=alkyl, aryl). N-ethylpropionamide is soluble (in water) and a very weakly acidic compound (based on its pKa). N-ethylpropionamide can be found in tea, which makes N-ethylpropionamide a potential biomarker for the consumption of this food product.
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0302430 (N-Ethylpropionamide)


  Mrv1533007131513362D          

  7  6  0  0  0  0            999 V2000
    2.0625    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375   -0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  5  3  1  0  0  0  0
  6  4  1  4  0  0  0
  6  5  2  0  0  0  0
  7  5  1  0  0  0  0
M  END
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3D MOL for HMDB0302430 (N-Ethylpropionamide)

HMDB0302430
     RDKit          3D
N-Ethylpropionamide
 18 17  0  0  0  0  0  0  0  0999 V2000
    2.6659    0.2977   -0.0458 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7371   -0.6348   -0.8199 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5552   -0.9498   -0.0800 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3209   -0.0469    0.1470 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1199    1.2335   -0.3260 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5428   -0.3806    0.9143 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7673   -0.1074    0.0293 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8989   -0.1540    0.9391 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6070    0.3439   -0.6329 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1844    1.2842    0.0722 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5310   -0.1262   -1.7842 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3032   -1.5539   -1.0585 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3662    2.0071    0.2945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5723   -1.4309    1.2286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6374    0.2993    1.8096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6818    0.0254    0.6431 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5844    0.8476   -0.5098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8899   -0.9542   -0.6694 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  3
  4  5  1  0
  4  6  1  0
  6  7  1  0
  1  8  1  0
  1  9  1  0
  1 10  1  0
  2 11  1  0
  2 12  1  0
  5 13  1  0
  6 14  1  0
  6 15  1  0
  7 16  1  0
  7 17  1  0
  7 18  1  0
M  END
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3D SDF for HMDB0302430 (N-Ethylpropionamide)


  Mrv1533007131513362D          

  7  6  0  0  0  0            999 V2000
    2.0625    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375   -0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  5  3  1  0  0  0  0
  6  4  1  4  0  0  0
  6  5  2  0  0  0  0
  7  5  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0302430

> <DATABASE_NAME>
hmdb

> <SMILES>
CCN=C(O)CC

> <INCHI_IDENTIFIER>
InChI=1S/C5H11NO/c1-3-5(7)6-4-2/h3-4H2,1-2H3,(H,6,7)

> <INCHI_KEY>
ABMDIECEEGFXNC-UHFFFAOYSA-N

> <FORMULA>
C5H11NO

> <MOLECULAR_WEIGHT>
101.149

> <EXACT_MASS>
101.084063978

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
18

> <JCHEM_AVERAGE_POLARIZABILITY>
11.809853620233387

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
N-ethylpropanimidic acid

> <ALOGPS_LOGP>
0.98

> <JCHEM_LOGP>
0.43942461946678935

> <ALOGPS_LOGS>
-0.90

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.308720460482095

> <JCHEM_PKA_STRONGEST_BASIC>
7.19856649284701

> <JCHEM_POLAR_SURFACE_AREA>
32.59

> <JCHEM_REFRACTIVITY>
29.2598

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.27e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
N-ethylpropanimidic acid

> <JCHEM_VEBER_RULE>
1

$$$$
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3D-SDF for HMDB0302430 (N-Ethylpropionamide)

HMDB0302430
     RDKit          3D
N-Ethylpropionamide
 18 17  0  0  0  0  0  0  0  0999 V2000
    2.6659    0.2977   -0.0458 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7371   -0.6348   -0.8199 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5552   -0.9498   -0.0800 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3209   -0.0469    0.1470 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1199    1.2335   -0.3260 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5428   -0.3806    0.9143 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7673   -0.1074    0.0293 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8989   -0.1540    0.9391 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6070    0.3439   -0.6329 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1844    1.2842    0.0722 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5310   -0.1262   -1.7842 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3032   -1.5539   -1.0585 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3662    2.0071    0.2945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5723   -1.4309    1.2286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6374    0.2993    1.8096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6818    0.0254    0.6431 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5844    0.8476   -0.5098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8899   -0.9542   -0.6694 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  3
  4  5  1  0
  4  6  1  0
  6  7  1  0
  1  8  1  0
  1  9  1  0
  1 10  1  0
  2 11  1  0
  2 12  1  0
  5 13  1  0
  6 14  1  0
  6 15  1  0
  7 16  1  0
  7 17  1  0
  7 18  1  0
M  END
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PDB for HMDB0302430 (N-Ethylpropionamide)

HEADER    PROTEIN                                 13-JUL-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   13-JUL-15         0                                  
HETATM    1  C   UNK     0       3.850   1.334   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000  -2.667   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.770  -1.334   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0       0.000   0.000   0.000  0.00  0.00           N+0
HETATM    7  O   UNK     0       2.310  -1.334   0.000  0.00  0.00           O+0
CONECT    1    3                                                            
CONECT    2    4                                                            
CONECT    3    1    5                                                       
CONECT    4    2    6                                                       
CONECT    5    3    6    7                                                  
CONECT    6    4    5                                                       
CONECT    7    5                                                            
MASTER        0    0    0    0    0    0    0    0    7    0   12    0
END
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3D PDB for HMDB0302430 (N-Ethylpropionamide)

COMPND    HMDB0302430
HETATM    1  C1  UNL     1       2.666   0.298  -0.046  1.00  0.00           C  
HETATM    2  C2  UNL     1       1.737  -0.635  -0.820  1.00  0.00           C  
HETATM    3  N1  UNL     1       0.555  -0.950  -0.080  1.00  0.00           N  
HETATM    4  C3  UNL     1      -0.321  -0.047   0.147  1.00  0.00           C  
HETATM    5  O1  UNL     1      -0.120   1.234  -0.326  1.00  0.00           O  
HETATM    6  C4  UNL     1      -1.543  -0.381   0.914  1.00  0.00           C  
HETATM    7  C5  UNL     1      -2.767  -0.107   0.029  1.00  0.00           C  
HETATM    8  H1  UNL     1       2.899  -0.154   0.939  1.00  0.00           H  
HETATM    9  H2  UNL     1       3.607   0.344  -0.633  1.00  0.00           H  
HETATM   10  H3  UNL     1       2.184   1.284   0.072  1.00  0.00           H  
HETATM   11  H4  UNL     1       1.531  -0.126  -1.784  1.00  0.00           H  
HETATM   12  H5  UNL     1       2.303  -1.554  -1.058  1.00  0.00           H  
HETATM   13  H6  UNL     1      -0.366   2.007   0.294  1.00  0.00           H  
HETATM   14  H7  UNL     1      -1.572  -1.431   1.229  1.00  0.00           H  
HETATM   15  H8  UNL     1      -1.637   0.299   1.810  1.00  0.00           H  
HETATM   16  H9  UNL     1      -3.682   0.025   0.643  1.00  0.00           H  
HETATM   17  H10 UNL     1      -2.584   0.848  -0.510  1.00  0.00           H  
HETATM   18  H11 UNL     1      -2.890  -0.954  -0.669  1.00  0.00           H  
CONECT    1    2    8    9   10
CONECT    2    3   11   12
CONECT    3    4    4
CONECT    4    5    6
CONECT    5   13
CONECT    6    7   14   15
CONECT    7   16   17   18
END
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SMILES for HMDB0302430 (N-Ethylpropionamide)

CCN=C(O)CC
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INCHI for HMDB0302430 (N-Ethylpropionamide)

InChI=1S/C5H11NO/c1-3-5(7)6-4-2/h3-4H2,1-2H3,(H,6,7)
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View in JSmolView Stereo Labels
SynonymsNot Available
Chemical FormulaC5H11NO
Average Molecular Weight101.149
Monoisotopic Molecular Weight101.084063978
IUPAC NameN-ethylpropanimidic acid
Traditional NameN-ethylpropanimidic acid
CAS Registry NumberNot Available
SMILES
CCN=C(O)CC
InChI Identifier
InChI=1S/C5H11NO/c1-3-5(7)6-4-2/h3-4H2,1-2H3,(H,6,7)
InChI KeyABMDIECEEGFXNC-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as secondary carboxylic acid amides. Secondary carboxylic acid amides are compounds containing a secondary carboxylic acid amide functional group, with the general structure RC(=O)N(R')H (R,R'=alkyl, aryl).
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassCarboxylic acid derivatives
Direct ParentSecondary carboxylic acid amides
Alternative Parents
Substituents
  • Secondary carboxylic acid amide
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Source
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP0.98ALOGPS
logP0.44ChemAxon
logS-0.9ALOGPS
pKa (Strongest Acidic)5.31ChemAxon
pKa (Strongest Basic)7.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area32.59 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity29.26 m³·mol⁻¹ChemAxon
Polarizability11.81 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+126.6532859911
AllCCS[M+H-H2O]+122.34532859911
AllCCS[M+Na]+131.82732859911
AllCCS[M+NH4]+130.66732859911
AllCCS[M-H]-128.47832859911
AllCCS[M+Na-2H]-132.48632859911
AllCCS[M+HCOO]-136.90932859911
DeepCCS[M+H]+123.56930932474
DeepCCS[M-H]-121.31430932474
DeepCCS[M-2H]-157.37530932474
DeepCCS[M+Na]+132.00630932474

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Predicted by Siyang on May 30, 20228.9972 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20223.97 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid989.5 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid317.2 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid101.2 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid197.6 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid72.6 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid284.9 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid320.2 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)79.3 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid664.5 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid237.1 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid841.0 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid214.4 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid247.8 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate399.9 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA246.1 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water79.9 seconds40023050

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Ethylpropionamide 10V, Positive-QTOFsplash10-0f6x-9300000000-32bcf9acd03404b047f12016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Ethylpropionamide 20V, Positive-QTOFsplash10-0006-9000000000-8c5538ba8709cda0fd932016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Ethylpropionamide 40V, Positive-QTOFsplash10-0006-9000000000-18c98c994a0477db17a22016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Ethylpropionamide 10V, Negative-QTOFsplash10-0udi-4900000000-ab0814abd17382d72b512016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Ethylpropionamide 20V, Negative-QTOFsplash10-0ukc-9300000000-3242f8d05c9d9b09af042016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Ethylpropionamide 40V, Negative-QTOFsplash10-0006-9000000000-6efb80a44400f30d14632016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Ethylpropionamide 10V, Positive-QTOFsplash10-0k95-9200000000-9bc414058618e3deebca2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Ethylpropionamide 20V, Positive-QTOFsplash10-0007-9000000000-6c28a7a6912ed807856b2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Ethylpropionamide 40V, Positive-QTOFsplash10-0006-9000000000-b16bbc23d405e90c91392021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Ethylpropionamide 10V, Negative-QTOFsplash10-0006-9000000000-3988c817098d22388f162021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Ethylpropionamide 20V, Negative-QTOFsplash10-0006-9000000000-24de0ec09a27e39d66632021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Ethylpropionamide 40V, Negative-QTOFsplash10-0006-9000000000-0976e97aa0c8db1be5e02021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB004542
KNApSAcK IDNot Available
Chemspider ID454744
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound521324
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available