Hmdb loader

Showing metabocard for DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0) (HMDB0300425)

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IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesenzymes (131)transporters (1) Show 132 proteinsXML
enzymes (131)transporters (1) Show 132 proteins
Record Information
Version5.0
StatusPredicted
Creation Date2021-09-20 06:48:07 UTC
Update Date2022-11-30 20:11:38 UTC
HMDB IDHMDB0300425
Secondary Accession NumbersNone
Metabolite Identification
Common NameDG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0)
Description(2S)-2-hydroxy-3-{[(5Z,12R,14Z)-12-hydroxyicosa-5,8,10,14-tetraenoyl]oxy}propyl 20-methylhenicosanoate belongs to the class of organic compounds known as 1,3-diacylglycerols. These are diacylglycerols containing a glycerol acylated at positions 1 and 3. Based on a literature review a significant number of articles have been published on (2S)-2-hydroxy-3-{[(5Z,12R,14Z)-12-hydroxyicosa-5,8,10,14-tetraenoyl]oxy}propyl 20-methylhenicosanoate.
Structure
Thumb
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0300425 (DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0))

DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0)
  Mrv1652309202108482D          

 51 50  0  0  1  0            999 V2000
   24.1444   -6.4801    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.1832   -7.0352    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   22.2217   -6.4803    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.1443   -5.3701    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.2603   -7.0352    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.1828   -8.1454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.5458   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5458   -5.8512    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.8317   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.1176   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4035   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6894   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8644   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1503   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4362   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6112   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.8971   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1829   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4688   -7.0357    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.4688   -7.8072    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.7547   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0406   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2156   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5015   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.0733   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3592   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6450   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.4298   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.4298   -4.1862    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.7157   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   11.2899   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  2  1  1  0  0  0  0
  2  6  1  6  0  0  0
  3  2  1  0  0  0  0
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 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 49 51  1  0  0  0  0
M  END
Download

3D MOL for HMDB0300425 (DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0))

HMDB0300425
     RDKit          3D
DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0)
131130  0  0  0  0  0  0  0  0999 V2000
  -15.8853    5.5831   -0.0483 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.2853    4.2085    0.4946 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.3837    3.1385   -0.1333 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.7283    1.8341    0.5263 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.0681    0.6979   -0.2290 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.6175    0.9674   -0.5107 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6575    0.2483   -0.0831 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0065   -0.9503    0.7619 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9136   -2.1698    0.0012 C   0  0  1  0  0  0  0  0  0  0  0  0
  -13.8860   -2.0712   -1.0826 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7654   -2.7073   -0.5606 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7338   -3.1845   -1.0589 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6307   -3.7428   -1.6433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4615   -3.0897   -1.1942 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.0974   -2.3292    1.4926 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1709   -3.2395    0.7615 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2871   -2.2483   -0.0477 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0499   -1.0247    0.8179 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3642   -0.0231    0.0516 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4071    1.2046    0.6220 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6969   -0.0500   -1.1151 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9540    1.0318   -1.6862 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6535    0.8945   -0.7068 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1846    0.9334    0.5513 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1054   -0.4382   -1.0553 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4321   -1.1614   -0.1500 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3838   -1.4407    0.7758 C   0  0  0  0  0  0  0  0  0  0  0  0
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    9.4689    1.0136   -0.6515 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3704    2.1309   -0.0197 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5499    2.4134   -0.8691 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6155    3.1050   -0.0092 C   0  0  0  0  0  0  0  0  0  0  0  0
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    9.6225    3.0323   -0.1188 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4652    2.0088    1.0424 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3260    3.1615   -1.6341 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8872    1.4854   -1.3190 H   0  0  0  0  0  0  0  0  0  0  0  0
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   13.5036    3.1808   -0.6008 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.8116    2.4246    1.6319 H   0  0  0  0  0  0  0  0  0  0  0  0
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   12.0095    0.3192    0.2476 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.0624   -0.3735   -0.7393 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.2875    1.3506   -0.9238 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.5041   -0.7541    0.9167 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.3878    0.9126    1.6668 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.3742    0.2097   -1.1320 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.9418    2.6243    0.5448 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.8657    2.4734   -1.2646 H   0  0  0  0  0  0  0  0  0  0  0  0
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   18.5306    1.1142    0.6824 H   0  0  0  0  0  0  0  0  0  0  0  0
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 51131  1  0
M  END
Download

3D SDF for HMDB0300425 (DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0))

DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0)
  Mrv1652309202108482D          

 51 50  0  0  1  0            999 V2000
   24.1444   -6.4801    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.1832   -7.0352    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   22.2217   -6.4803    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.1443   -5.3701    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.2603   -7.0352    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.1828   -8.1454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.5458   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5458   -5.8512    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.8317   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.1176   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4035   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6894   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8644   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1503   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4362   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6112   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.8971   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1829   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4688   -7.0357    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.4688   -7.8072    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.7547   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0406   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2156   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5015   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7874   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0733   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3592   -7.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6450   -6.6226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.4298   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.4298   -4.1862    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.7157   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0016   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.2875   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.5734   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.8592   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.1451   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4310   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.7169   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   16.2886   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5745   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   14.1463   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4322   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7181   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0040   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2899   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5757   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8616   -5.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1475   -4.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1475   -5.7826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  2  6  1  6  0  0  0
  3  2  1  0  0  0  0
  4  1  1  0  0  0  0
  4 29  1  0  0  0  0
  5  3  1  0  0  0  0
  7  5  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
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 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  6  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 49 51  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0300425

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCC\C=C/C[C@@H](O)\C=C\C=C/C\C=C/CCCC(=O)OC[C@@H](O)COC(=O)CCCCCCCCCCCCCCCCCCC(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C45H80O6/c1-4-5-6-7-25-30-35-42(46)36-31-26-21-18-19-23-28-33-38-45(49)51-40-43(47)39-50-44(48)37-32-27-22-17-15-13-11-9-8-10-12-14-16-20-24-29-34-41(2)3/h19,21,23,25-26,30-31,36,41-43,46-47H,4-18,20,22,24,27-29,32-35,37-40H2,1-3H3/b23-19-,26-21-,30-25-,36-31+/t42-,43+/m1/s1

> <INCHI_KEY>
BGVKKCBQIOKKDK-QZJRUPRBSA-N

> <FORMULA>
C45H80O6

> <MOLECULAR_WEIGHT>
717.129

> <EXACT_MASS>
716.595490296

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
131

> <JCHEM_AVERAGE_POLARIZABILITY>
92.69416580785577

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-hydroxy-3-{[(5Z,8Z,10E,12R,14Z)-12-hydroxyicosa-5,8,10,14-tetraenoyl]oxy}propyl 20-methylhenicosanoate

> <ALOGPS_LOGP>
10.17

> <JCHEM_LOGP>
13.612733169666669

> <ALOGPS_LOGS>
-7.49

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
17.720826396394717

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.631221426187796

> <JCHEM_PKA_STRONGEST_BASIC>
-1.6087073066088609

> <JCHEM_POLAR_SURFACE_AREA>
93.06

> <JCHEM_REFRACTIVITY>
219.63840000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
39

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.35e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-hydroxy-3-{[(5Z,8Z,10E,12R,14Z)-12-hydroxyicosa-5,8,10,14-tetraenoyl]oxy}propyl 20-methylhenicosanoate

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0300425 (DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0))

HMDB0300425
     RDKit          3D
DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0)
131130  0  0  0  0  0  0  0  0999 V2000
  -15.8853    5.5831   -0.0483 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.2853    4.2085    0.4946 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.3837    3.1385   -0.1333 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.7283    1.8341    0.5263 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.0681    0.6979   -0.2290 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.6175    0.9674   -0.5107 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6575    0.2483   -0.0831 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0065   -0.9503    0.7619 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9136   -2.1698    0.0012 C   0  0  1  0  0  0  0  0  0  0  0  0
  -13.8860   -2.0712   -1.0826 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7654   -2.7073   -0.5606 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7338   -3.1845   -1.0589 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6307   -3.7428   -1.6433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4615   -3.0897   -1.1942 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6912   -1.9924   -0.2560 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1718   -1.8143    0.9919 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0974   -2.3292    1.4926 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1709   -3.2395    0.7615 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2871   -2.2483   -0.0477 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0499   -1.0247    0.8179 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3642   -0.0231    0.0516 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4071    1.2046    0.6220 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6969   -0.0500   -1.1151 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9540    1.0318   -1.6862 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6535    0.8945   -0.7068 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1846    0.9334    0.5513 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1054   -0.4382   -1.0553 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4321   -1.1614   -0.1500 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3838   -1.4407    0.7758 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0575   -0.3595    1.2590 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7576   -2.6945    1.3790 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3452   -2.6026    1.2730 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6670   -2.0520   -0.0946 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0968   -2.1444   -0.3896 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4203   -1.2740   -1.6058 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6053    0.2108   -1.1383 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8093    0.1558   -0.1556 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9278   -0.6584   -0.8084 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0352   -0.7677    0.1902 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7103    0.4699    0.5585 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4689    1.0136   -0.6515 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3704    2.1309   -0.0197 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5499    2.4134   -0.8691 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6155    3.1050   -0.0092 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8026    2.1196    1.2452 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9168    0.7235    0.6784 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1773    0.5728   -0.1663 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3974    0.3707    0.7085 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.6057    0.6689   -0.1391 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4759    2.1944   -0.4080 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.9000    0.2756    0.4334 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.7569    5.6109   -0.0761 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -15.4977    3.0750   -1.2013 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.3422    3.4433    0.2059 H   0  0  0  0  0  0  0  0  0  0  0  0
  -16.8363    1.6873    0.4684 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.4418    1.8503    1.5851 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.5771    0.6231   -1.2140 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.2694   -0.2336    0.2942 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.4131    1.8447   -1.0931 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6317    0.5495   -0.3180 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -12.1310   -1.0308    1.5461 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -11.1203   -2.9306    0.7377 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6551   -3.9755   -1.9037 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -9.7457   -1.5437   -0.4200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7147   -1.1302    1.6958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7913   -2.1014    2.6108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5613   -4.0622    0.2090 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4067   -3.6686    1.5165 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6642   -2.0220   -1.0583 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2688   -2.7128   -0.1468 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3738   -1.3252    1.6025 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0223   -0.6414    1.2610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6592    0.7915   -2.6739 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4504    1.9635   -1.4871 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0420    1.7762   -0.8816 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0435   -0.0254    0.8870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9472   -1.0725   -1.4963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4054   -0.2656   -1.9893 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5111   -2.8127    2.4129 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4595   -3.5593    0.7554 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6538   -3.6902    1.3259 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6626   -1.9543    2.0777 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1573   -1.1330   -0.3355 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1505   -2.7715   -0.8381 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3470   -3.1789   -0.7261 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6760   -1.8827    0.4917 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1870   -1.5968   -2.2694 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4608   -1.2085   -2.1718 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7277    0.4156   -0.4615 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6787    0.8709   -1.9449 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6033   -0.1273    0.8543 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2239    1.2326   -0.2233 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5235   -1.7456   -0.9182 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2297   -0.2070   -1.7288 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8562   -1.4784   -0.1839 H   0  0  0  0  0  0  0  0  0  0  0  0
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    8.0876    1.2844    1.0030 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1253    0.2216   -1.0512 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8347    1.4082   -1.4523 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6225    3.0323   -0.1188 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4652    2.0088    1.0424 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3260    3.1615   -1.6341 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8872    1.4854   -1.3190 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.2462    4.0162    0.3612 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.5036    3.1808   -0.6008 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.8116    2.4246    1.6319 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.0229    2.2345    1.9037 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1029    0.1062    1.5721 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.0095    0.3192    0.2476 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.0624   -0.3735   -0.7393 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.2875    1.3506   -0.9238 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.5041   -0.7541    0.9167 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.3878    0.9126    1.6668 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.3742    0.2097   -1.1320 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.9418    2.6243    0.5448 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.8657    2.4734   -1.2646 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.4569    2.6574   -0.4559 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.7544   -0.4704    1.2676 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.4818   -0.2799   -0.4016 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.5306    1.1142    0.6824 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

PDB for HMDB0300425 (DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0))

HEADER    PROTEIN                                 20-SEP-21   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0)        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-SEP-21         0                                  
HETATM    1  C   UNK     0      45.070 -12.096   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      43.275 -13.132   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      41.481 -12.097   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      45.069 -10.024   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      39.686 -13.132   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      43.275 -15.205   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      38.352 -12.362   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      38.352 -10.922   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      37.019 -13.133   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      35.686 -12.362   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      34.353 -13.133   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      33.020 -12.362   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      31.480 -12.362   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      30.147 -13.133   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      28.814 -12.362   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      27.274 -12.362   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      25.941 -13.133   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      24.608 -12.362   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      23.275 -13.133   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      23.275 -14.573   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      21.942 -12.362   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      20.609 -13.133   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      19.069 -13.133   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      17.736 -12.362   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      16.403 -13.133   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      15.070 -12.362   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      13.737 -13.133   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      12.404 -12.362   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      43.736  -9.254   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      43.736  -7.814   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      42.403 -10.025   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      41.070  -9.254   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      39.737 -10.025   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      38.404  -9.254   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      37.071 -10.025   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      35.738  -9.254   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      34.405 -10.025   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      33.072  -9.254   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      31.739 -10.025   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      30.405  -9.254   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      29.072 -10.025   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      27.739  -9.254   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      26.406 -10.025   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      25.073  -9.254   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      23.740 -10.025   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      22.407  -9.254   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      21.074 -10.025   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      19.741  -9.254   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      18.408 -10.025   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      17.075  -9.254   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      17.075 -10.794   0.000  0.00  0.00           C+0
CONECT    1    2    4                                                       
CONECT    2    1    6    3                                                  
CONECT    3    2    5                                                       
CONECT    4    1   29                                                       
CONECT    5    3    7                                                       
CONECT    6    2                                                            
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27                                                            
CONECT   29    4   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50   51                                                  
CONECT   50   49                                                            
CONECT   51   49                                                            
MASTER        0    0    0    0    0    0    0    0   51    0  100    0
END
Download

3D PDB for HMDB0300425 (DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0))

COMPND    HMDB0300425
HETATM    1  C1  UNL     1     -15.885   5.583  -0.048  1.00  0.00           C  
HETATM    2  C2  UNL     1     -16.285   4.209   0.495  1.00  0.00           C  
HETATM    3  C3  UNL     1     -15.384   3.138  -0.133  1.00  0.00           C  
HETATM    4  C4  UNL     1     -15.728   1.834   0.526  1.00  0.00           C  
HETATM    5  C5  UNL     1     -15.068   0.698  -0.229  1.00  0.00           C  
HETATM    6  C6  UNL     1     -13.618   0.967  -0.511  1.00  0.00           C  
HETATM    7  C7  UNL     1     -12.657   0.248  -0.083  1.00  0.00           C  
HETATM    8  C8  UNL     1     -13.006  -0.950   0.762  1.00  0.00           C  
HETATM    9  C9  UNL     1     -12.914  -2.170   0.001  1.00  0.00           C  
HETATM   10  O1  UNL     1     -13.886  -2.071  -1.083  1.00  0.00           O  
HETATM   11  C10 UNL     1     -11.765  -2.707  -0.561  1.00  0.00           C  
HETATM   12  C11 UNL     1     -10.734  -3.184  -1.059  1.00  0.00           C  
HETATM   13  C12 UNL     1      -9.631  -3.743  -1.643  1.00  0.00           C  
HETATM   14  C13 UNL     1      -8.462  -3.090  -1.194  1.00  0.00           C  
HETATM   15  C14 UNL     1      -8.691  -1.992  -0.256  1.00  0.00           C  
HETATM   16  C15 UNL     1      -8.172  -1.814   0.992  1.00  0.00           C  
HETATM   17  C16 UNL     1      -7.097  -2.329   1.493  1.00  0.00           C  
HETATM   18  C17 UNL     1      -6.171  -3.239   0.762  1.00  0.00           C  
HETATM   19  C18 UNL     1      -5.287  -2.248  -0.048  1.00  0.00           C  
HETATM   20  C19 UNL     1      -5.050  -1.025   0.818  1.00  0.00           C  
HETATM   21  C20 UNL     1      -4.364  -0.023   0.052  1.00  0.00           C  
HETATM   22  O2  UNL     1      -4.407   1.205   0.622  1.00  0.00           O  
HETATM   23  O3  UNL     1      -3.697  -0.050  -1.115  1.00  0.00           O  
HETATM   24  C21 UNL     1      -2.954   1.032  -1.686  1.00  0.00           C  
HETATM   25  C22 UNL     1      -1.654   0.894  -0.707  1.00  0.00           C  
HETATM   26  O4  UNL     1      -2.185   0.933   0.551  1.00  0.00           O  
HETATM   27  C23 UNL     1      -1.105  -0.438  -1.055  1.00  0.00           C  
HETATM   28  O5  UNL     1      -0.432  -1.161  -0.150  1.00  0.00           O  
HETATM   29  C24 UNL     1       0.384  -1.441   0.776  1.00  0.00           C  
HETATM   30  O6  UNL     1       1.058  -0.359   1.259  1.00  0.00           O  
HETATM   31  C25 UNL     1       0.758  -2.695   1.379  1.00  0.00           C  
HETATM   32  C26 UNL     1       2.345  -2.603   1.273  1.00  0.00           C  
HETATM   33  C27 UNL     1       2.667  -2.052  -0.095  1.00  0.00           C  
HETATM   34  C28 UNL     1       4.097  -2.144  -0.390  1.00  0.00           C  
HETATM   35  C29 UNL     1       4.420  -1.274  -1.606  1.00  0.00           C  
HETATM   36  C30 UNL     1       4.605   0.211  -1.138  1.00  0.00           C  
HETATM   37  C31 UNL     1       5.809   0.156  -0.156  1.00  0.00           C  
HETATM   38  C32 UNL     1       6.928  -0.658  -0.808  1.00  0.00           C  
HETATM   39  C33 UNL     1       8.035  -0.768   0.190  1.00  0.00           C  
HETATM   40  C34 UNL     1       8.710   0.470   0.559  1.00  0.00           C  
HETATM   41  C35 UNL     1       9.469   1.014  -0.651  1.00  0.00           C  
HETATM   42  C36 UNL     1      10.370   2.131  -0.020  1.00  0.00           C  
HETATM   43  C37 UNL     1      11.550   2.413  -0.869  1.00  0.00           C  
HETATM   44  C38 UNL     1      12.616   3.105  -0.009  1.00  0.00           C  
HETATM   45  C39 UNL     1      12.803   2.120   1.245  1.00  0.00           C  
HETATM   46  C40 UNL     1      12.917   0.724   0.678  1.00  0.00           C  
HETATM   47  C41 UNL     1      14.177   0.573  -0.166  1.00  0.00           C  
HETATM   48  C42 UNL     1      15.397   0.371   0.708  1.00  0.00           C  
HETATM   49  C43 UNL     1      16.606   0.669  -0.139  1.00  0.00           C  
HETATM   50  C44 UNL     1      16.476   2.194  -0.408  1.00  0.00           C  
HETATM   51  C45 UNL     1      17.900   0.276   0.433  1.00  0.00           C  
HETATM   52  H1  UNL     1     -14.757   5.611  -0.076  1.00  0.00           H  
HETATM   53  H2  UNL     1     -16.198   6.332   0.718  1.00  0.00           H  
HETATM   54  H3  UNL     1     -16.309   5.811  -1.012  1.00  0.00           H  
HETATM   55  H4  UNL     1     -17.342   4.011   0.083  1.00  0.00           H  
HETATM   56  H5  UNL     1     -16.292   4.156   1.567  1.00  0.00           H  
HETATM   57  H6  UNL     1     -15.498   3.075  -1.201  1.00  0.00           H  
HETATM   58  H7  UNL     1     -14.342   3.443   0.206  1.00  0.00           H  
HETATM   59  H8  UNL     1     -16.836   1.687   0.468  1.00  0.00           H  
HETATM   60  H9  UNL     1     -15.442   1.850   1.585  1.00  0.00           H  
HETATM   61  H10 UNL     1     -15.577   0.623  -1.214  1.00  0.00           H  
HETATM   62  H11 UNL     1     -15.269  -0.234   0.294  1.00  0.00           H  
HETATM   63  H12 UNL     1     -13.413   1.845  -1.093  1.00  0.00           H  
HETATM   64  H13 UNL     1     -11.632   0.550  -0.318  1.00  0.00           H  
HETATM   65  H14 UNL     1     -13.936  -0.871   1.337  1.00  0.00           H  
HETATM   66  H15 UNL     1     -12.131  -1.031   1.546  1.00  0.00           H  
HETATM   67  H16 UNL     1     -13.430  -3.035   0.683  1.00  0.00           H  
HETATM   68  H17 UNL     1     -13.415  -1.481  -1.831  1.00  0.00           H  
HETATM   69  H18 UNL     1     -11.120  -2.931   0.738  1.00  0.00           H  
HETATM   70  H19 UNL     1     -11.655  -3.975  -1.904  1.00  0.00           H  
HETATM   71  H20 UNL     1      -9.384  -4.478  -2.386  1.00  0.00           H  
HETATM   72  H21 UNL     1      -7.503  -3.358  -1.625  1.00  0.00           H  
HETATM   73  H22 UNL     1      -8.189  -0.959  -0.876  1.00  0.00           H  
HETATM   74  H23 UNL     1      -9.746  -1.544  -0.420  1.00  0.00           H  
HETATM   75  H24 UNL     1      -8.715  -1.130   1.696  1.00  0.00           H  
HETATM   76  H25 UNL     1      -6.791  -2.101   2.611  1.00  0.00           H  
HETATM   77  H26 UNL     1      -6.561  -4.062   0.209  1.00  0.00           H  
HETATM   78  H27 UNL     1      -5.407  -3.669   1.516  1.00  0.00           H  
HETATM   79  H28 UNL     1      -5.664  -2.022  -1.058  1.00  0.00           H  
HETATM   80  H29 UNL     1      -4.269  -2.713  -0.147  1.00  0.00           H  
HETATM   81  H30 UNL     1      -4.374  -1.325   1.603  1.00  0.00           H  
HETATM   82  H31 UNL     1      -6.022  -0.641   1.261  1.00  0.00           H  
HETATM   83  H32 UNL     1      -2.659   0.791  -2.674  1.00  0.00           H  
HETATM   84  H33 UNL     1      -3.450   1.963  -1.487  1.00  0.00           H  
HETATM   85  H34 UNL     1      -1.042   1.776  -0.882  1.00  0.00           H  
HETATM   86  H35 UNL     1      -2.043  -0.025   0.887  1.00  0.00           H  
HETATM   87  H36 UNL     1      -1.947  -1.073  -1.496  1.00  0.00           H  
HETATM   88  H37 UNL     1      -0.405  -0.266  -1.989  1.00  0.00           H  
HETATM   89  H38 UNL     1       0.511  -2.813   2.413  1.00  0.00           H  
HETATM   90  H39 UNL     1       0.460  -3.559   0.755  1.00  0.00           H  
HETATM   91  H40 UNL     1       2.654  -3.690   1.326  1.00  0.00           H  
HETATM   92  H41 UNL     1       2.663  -1.954   2.078  1.00  0.00           H  
HETATM   93  H42 UNL     1       2.157  -1.133  -0.336  1.00  0.00           H  
HETATM   94  H43 UNL     1       2.151  -2.772  -0.838  1.00  0.00           H  
HETATM   95  H44 UNL     1       4.347  -3.179  -0.726  1.00  0.00           H  
HETATM   96  H45 UNL     1       4.676  -1.883   0.492  1.00  0.00           H  
HETATM   97  H46 UNL     1       5.187  -1.597  -2.269  1.00  0.00           H  
HETATM   98  H47 UNL     1       3.461  -1.208  -2.172  1.00  0.00           H  
HETATM   99  H48 UNL     1       3.728   0.416  -0.462  1.00  0.00           H  
HETATM  100  H49 UNL     1       4.679   0.871  -1.945  1.00  0.00           H  
HETATM  101  H50 UNL     1       5.603  -0.127   0.854  1.00  0.00           H  
HETATM  102  H51 UNL     1       6.224   1.233  -0.223  1.00  0.00           H  
HETATM  103  H52 UNL     1       6.524  -1.746  -0.918  1.00  0.00           H  
HETATM  104  H53 UNL     1       7.230  -0.207  -1.729  1.00  0.00           H  
HETATM  105  H54 UNL     1       8.856  -1.478  -0.184  1.00  0.00           H  
HETATM  106  H55 UNL     1       7.635  -1.297   1.104  1.00  0.00           H  
HETATM  107  H56 UNL     1       9.524   0.238   1.277  1.00  0.00           H  
HETATM  108  H57 UNL     1       8.088   1.284   1.003  1.00  0.00           H  
HETATM  109  H58 UNL     1      10.125   0.222  -1.051  1.00  0.00           H  
HETATM  110  H59 UNL     1       8.835   1.408  -1.452  1.00  0.00           H  
HETATM  111  H60 UNL     1       9.623   3.032  -0.119  1.00  0.00           H  
HETATM  112  H61 UNL     1      10.465   2.009   1.042  1.00  0.00           H  
HETATM  113  H62 UNL     1      11.326   3.161  -1.634  1.00  0.00           H  
HETATM  114  H63 UNL     1      11.887   1.485  -1.319  1.00  0.00           H  
HETATM  115  H64 UNL     1      12.246   4.016   0.361  1.00  0.00           H  
HETATM  116  H65 UNL     1      13.504   3.181  -0.601  1.00  0.00           H  
HETATM  117  H66 UNL     1      13.812   2.425   1.632  1.00  0.00           H  
HETATM  118  H67 UNL     1      12.023   2.234   1.904  1.00  0.00           H  
HETATM  119  H68 UNL     1      13.103   0.106   1.572  1.00  0.00           H  
HETATM  120  H69 UNL     1      12.009   0.319   0.248  1.00  0.00           H  
HETATM  121  H70 UNL     1      14.062  -0.374  -0.739  1.00  0.00           H  
HETATM  122  H71 UNL     1      14.287   1.351  -0.924  1.00  0.00           H  
HETATM  123  H72 UNL     1      15.504  -0.754   0.917  1.00  0.00           H  
HETATM  124  H73 UNL     1      15.388   0.913   1.667  1.00  0.00           H  
HETATM  125  H74 UNL     1      16.374   0.210  -1.132  1.00  0.00           H  
HETATM  126  H75 UNL     1      15.942   2.624   0.545  1.00  0.00           H  
HETATM  127  H76 UNL     1      15.866   2.473  -1.265  1.00  0.00           H  
HETATM  128  H77 UNL     1      17.457   2.657  -0.456  1.00  0.00           H  
HETATM  129  H78 UNL     1      17.754  -0.470   1.268  1.00  0.00           H  
HETATM  130  H79 UNL     1      18.482  -0.280  -0.402  1.00  0.00           H  
HETATM  131  H80 UNL     1      18.531   1.114   0.682  1.00  0.00           H  
CONECT    1    2   52   53   54
CONECT    2    3   55   56
CONECT    3    4   57   58
CONECT    4    5   59   60
CONECT    5    6   61   62
CONECT    6    7    7   63
CONECT    7    8   64
CONECT    8    9   65   66
CONECT    9   10   11   67
CONECT   10   68
CONECT   11   12   12   69
CONECT   12   13   70
CONECT   13   14   14   71
CONECT   14   15   72
CONECT   15   16   73   74
CONECT   16   17   17   75
CONECT   17   18   76
CONECT   18   19   77   78
CONECT   19   20   79   80
CONECT   20   21   81   82
CONECT   21   22   22   23
CONECT   23   24
CONECT   24   25   83   84
CONECT   25   26   27   85
CONECT   26   86
CONECT   27   28   87   88
CONECT   28   29
CONECT   29   30   30   31
CONECT   31   32   89   90
CONECT   32   33   91   92
CONECT   33   34   93   94
CONECT   34   35   95   96
CONECT   35   36   97   98
CONECT   36   37   99  100
CONECT   37   38  101  102
CONECT   38   39  103  104
CONECT   39   40  105  106
CONECT   40   41  107  108
CONECT   41   42  109  110
CONECT   42   43  111  112
CONECT   43   44  113  114
CONECT   44   45  115  116
CONECT   45   46  117  118
CONECT   46   47  119  120
CONECT   47   48  121  122
CONECT   48   49  123  124
CONECT   49   50   51  125
CONECT   50  126  127  128
CONECT   51  129  130  131
END
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SMILES for HMDB0300425 (DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0))

CCCCC\C=C/C[C@@H](O)\C=C\C=C/C\C=C/CCCC(=O)OC[C@@H](O)COC(=O)CCCCCCCCCCCCCCCCCCC(C)C
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INCHI for HMDB0300425 (DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0))

InChI=1S/C45H80O6/c1-4-5-6-7-25-30-35-42(46)36-31-26-21-18-19-23-28-33-38-45(49)51-40-43(47)39-50-44(48)37-32-27-22-17-15-13-11-9-8-10-12-14-16-20-24-29-34-41(2)3/h19,21,23,25-26,30-31,36,41-43,46-47H,4-18,20,22,24,27-29,32-35,37-40H2,1-3H3/b23-19-,26-21-,30-25-,36-31+/t42-,43+/m1/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
(2S)-2-Hydroxy-3-{[(5Z,12R,14Z)-12-hydroxyicosa-5,8,10,14-tetraenoyl]oxy}propyl 20-methylhenicosanoic acidGenerator
Chemical FormulaC45H80O6
Average Molecular Weight717.129
Monoisotopic Molecular Weight716.595490296
IUPAC Name(2S)-2-hydroxy-3-{[(5Z,8Z,10E,12R,14Z)-12-hydroxyicosa-5,8,10,14-tetraenoyl]oxy}propyl 20-methylhenicosanoate
Traditional Name(2S)-2-hydroxy-3-{[(5Z,8Z,10E,12R,14Z)-12-hydroxyicosa-5,8,10,14-tetraenoyl]oxy}propyl 20-methylhenicosanoate
CAS Registry NumberNot Available
SMILES
CCCCC\C=C/C[C@@H](O)\C=C\C=C/C\C=C/CCCC(=O)OC[C@@H](O)COC(=O)CCCCCCCCCCCCCCCCCCC(C)C
InChI Identifier
InChI=1S/C45H80O6/c1-4-5-6-7-25-30-35-42(46)36-31-26-21-18-19-23-28-33-38-45(49)51-40-43(47)39-50-44(48)37-32-27-22-17-15-13-11-9-8-10-12-14-16-20-24-29-34-41(2)3/h19,21,23,25-26,30-31,36,41-43,46-47H,4-18,20,22,24,27-29,32-35,37-40H2,1-3H3/b23-19-,26-21-,30-25-,36-31+/t42-,43+/m1/s1
InChI KeyBGVKKCBQIOKKDK-QZJRUPRBSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 1,3-diacylglycerols. These are diacylglycerols containing a glycerol acylated at positions 1 and 3.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerolipids
Sub ClassDiradylglycerols
Direct Parent1,3-diacylglycerols
Alternative Parents
Substituents
  • 1,3-acyl-sn-glycerol
  • Fatty alcohol
  • Fatty acid ester
  • Fatty acyl
  • Dicarboxylic acid or derivatives
  • Secondary alcohol
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Source
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP10.17ALOGPS
logP13.61ChemAxon
logS-7.5ALOGPS
pKa (Strongest Acidic)13.63ChemAxon
pKa (Strongest Basic)-1.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area93.06 ŲChemAxon
Rotatable Bond Count39ChemAxon
Refractivity219.64 m³·mol⁻¹ChemAxon
Polarizability92.69 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+280.00532859911
AllCCS[M+H-H2O]+279.79732859911
AllCCS[M+Na]+280.20932859911
AllCCS[M+NH4]+280.16832859911
AllCCS[M-H]-273.43732859911
AllCCS[M+Na-2H]-280.46932859911
AllCCS[M+HCOO]-288.21432859911
DeepCCS[M+H]+276.29130932474
DeepCCS[M-H]-274.46630932474
DeepCCS[M-2H]-307.7130932474
DeepCCS[M+Na]+281.89730932474

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Predicted by Siyang on May 30, 202243.1414 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20220.87 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid6022.9 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid877.7 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid425.3 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid398.2 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid1202.5 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid2057.9 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid1381.2 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)140.8 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid4205.3 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid1271.3 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid3385.3 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid1525.2 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid873.8 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate622.1 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA892.6 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water11.2 seconds40023050

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0) 10V, Positive-QTOFsplash10-0002-0004009300-88bd24ca21fd11ee19542021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0) 20V, Positive-QTOFsplash10-006t-2119106000-575452f7547cee98bc742021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0) 40V, Positive-QTOFsplash10-053r-9702003000-336207cfdc8f2298fd462021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0) 10V, Negative-QTOFsplash10-014r-1009100300-5c0370608d6208e9062e2021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0) 20V, Negative-QTOFsplash10-00ri-2009000100-d34468ee739e5698ef732021-10-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - DG(20:4(5Z,8Z,10E,14Z)-OH(12S)/0:0/i-22:0) 40V, Negative-QTOFsplash10-0uxr-0039000000-c3d78709f7e7b8cb723e2021-10-21Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound157008532
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details
1. Diacylglycerol kinase theta
General function:
Involved in diacylglycerol kinase activity
Specific function:
Phosphorylates diacylglycerol (DAG) to generate phosphatidic acid (PA). May regulate the activity of protein kinase C by controlling the balance between these two signaling lipids. Activated in the nucleus in response to alpha-thrombin and nerve growth factor. May be involved in cAMP- induced activation of NR5A1 and subsequent steroidogenic gene transcription by delivering PA as ligand for NR5A1. Acts synergistically with NR5A1 on CYP17 transcriptional activity
Gene Name:
DGKQ
Uniprot ID:
P52824
Molecular weight:
101154.0
Enzyme Details
2. Pancreatic triacylglycerol lipase
General function:
Involved in catalytic activity
Specific function:
Not Available
Gene Name:
PNLIP
Uniprot ID:
P16233
Molecular weight:
51156.48
Enzyme Details
3. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:
PLCB1
Uniprot ID:
Q9NQ66
Molecular weight:
138565.805
Enzyme Details
4. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. This form has a role in retina signal transduction.
Gene Name:
PLCB4
Uniprot ID:
Q15147
Molecular weight:
136105.065
Enzyme Details
5. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:
PLCB2
Uniprot ID:
Q00722
Molecular weight:
134023.21
Enzyme Details
6. Diacylglycerol kinase gamma
General function:
Involved in diacylglycerol kinase activity
Specific function:
Reverses the normal flow of glycerolipid biosynthesis by phosphorylating diacylglycerol back to phosphatidic acid
Gene Name:
DGKG
Uniprot ID:
P49619
Molecular weight:
89095.3
Enzyme Details
7. Hepatic triacylglycerol lipase
General function:
Involved in catalytic activity
Specific function:
Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin.
Gene Name:
LIPC
Uniprot ID:
P11150
Molecular weight:
55914.1
Enzyme Details
8. Lysosomal acid lipase/cholesteryl ester hydrolase
General function:
Involved in lipid metabolic process
Specific function:
Crucial for the intracellular hydrolysis of cholesteryl esters and triglycerides that have been internalized via receptor-mediated endocytosis of lipoprotein particles. Important in mediating the effect of LDL (low density lipoprotein) uptake on suppression of hydroxymethylglutaryl-CoA reductase and activation of endogenous cellular cholesteryl ester formation.
Gene Name:
LIPA
Uniprot ID:
P38571
Molecular weight:
45418.71
Enzyme Details
9. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3
General function:
Involved in calcium ion binding
Specific function:
The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:
PLCB3
Uniprot ID:
Q01970
Molecular weight:
138797.725
Enzyme Details
10. Inactive pancreatic lipase-related protein 1
General function:
Involved in catalytic activity
Specific function:
May function as inhibitor of dietary triglyceride digestion. Lacks detectable lipase activity towards triglycerides, diglycerides, phosphatidylcholine, galactolipids or cholesterol esters (in vitro) (By similarity).
Gene Name:
PNLIPRP1
Uniprot ID:
P54315
Molecular weight:
Not Available

Transporters

Enzyme Details
1. Long-chain fatty acid transport protein 1
General function:
Lipid transport and metabolism
Specific function:
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane- associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids
Gene Name:
SLC27A1
Uniprot ID:
Q6PCB7
Molecular weight:
71107.5

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters