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Identification Taxonomy Ontology Physical properties Spectra Biological properties Concentrations Links References enzymes (131)transporters (1) Show 132 proteins XML

enzymes (131)transporters (1) Show 132 proteins

Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-18 05:25:26 UTC

Update Date

2022-11-30 20:09:17 UTC

HMDB ID

HMDB0295011

Secondary Accession Numbers

None

Metabolite Identification

Common Name

DG(13:0/0:0/PGD1)

Description

DG(13:0/0:0/PGD1) belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. Based on a literature review very few articles have been published on DG(13:0/0:0/PGD1).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309182107252D          

 44 44  0  0  1  0            999 V2000
    5.6307  -16.0019    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9162  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9162  -17.2394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2018  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4873  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7728  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0584  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3439  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6294  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0851  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7995  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5140  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2285  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9429  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6574  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3452  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0597  -16.0019    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.7741  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4886  -16.0019    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2031  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2031  -17.2394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.9175  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6320  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3465  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0609  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7754  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4899  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2044  -16.0019    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.2906  -15.1815    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   13.6775  -14.6294    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.0976  -15.0099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5101  -15.7244    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3305  -15.8106    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.9580  -16.3375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   15.1296  -17.1445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5165  -17.6965    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6880  -18.5035    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.0749  -19.0555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.4726  -18.7584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6441  -19.5654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4288  -19.8203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.6003  -20.6273    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.3849  -20.8822    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0597  -15.1769    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  1 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 28 27  1  1  0  0  0
 28 29  1  0  0  0  0
 29 30  1  1  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 32 34  1  0  0  0  0
 28 34  1  0  0  0  0
 34 35  1  6  0  0  0
 35 36  2  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  6  0  0  0
 37 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 17 44  1  1  0  0  0
M  END

HMDB0295011
     RDKit          3D
DG(13:0/0:0/PGD1)
108108  0  0  0  0  0  0  0  0999 V2000
   15.0871    1.3248   -0.3798 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9339    1.2623   -1.3295 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5882    1.4056   -0.6402 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3845    0.2950    0.3800 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3904   -1.0529   -0.2522 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3106   -1.3606   -1.1924 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9276   -1.5513   -0.7632 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1050   -0.5640   -0.0769 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8338    0.7410   -0.7404 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1444    0.5952   -2.0755 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8296   -0.1027   -1.9722 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8173    0.5659   -1.0938 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5827   -0.2950   -1.1261 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7928   -0.1601   -2.0923 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2982   -1.2071   -0.1516 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1682   -2.0408   -0.1216 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8549   -1.3040   -0.0743 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8432   -2.2936   -0.0603 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7926   -0.5504    1.2597 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4744    0.0075    1.3391 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0487    0.7378    2.4115 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9055    0.9032    3.3579 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2863    1.3414    2.5731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2001    1.0393    1.4236 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4849   -0.4065    1.1898 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4348   -0.5547    0.0287 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7843    0.0821    0.2537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5078   -0.5178    1.4130 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8532    0.0137    1.7115 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.8577    1.4689    2.0327 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.6200    1.9244    2.4469 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3603    2.1731    0.8027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9274    1.1386   -0.1058 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3655    1.4243   -1.2035 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8399   -0.1732    0.5707 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.1161   -0.6013    1.2009 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2639    0.0880    1.0944 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5147   -0.3632    1.7327 C   0  0  1  0  0  0  0  0  0  0  0  0
  -11.6006    0.2239    3.0041 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7268    0.0585    0.9773 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9146   -0.4353   -0.4023 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8247   -0.0487   -1.3272 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1091   -0.5418   -2.7590 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9428   -0.0956   -3.6079 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1309    0.4710    0.3190 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.0149    1.2381   -1.0152 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.1136    2.3097    0.1355 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.9650    0.3175   -1.9094 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.0388    2.0919   -2.0565 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4780    2.4121   -0.2104 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8341    1.2815   -1.4341 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1506    0.3738    1.1954 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4316    0.5000    0.8611 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.3895   -1.2874   -0.7242 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.3937   -1.7867    0.6339 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6085   -2.3401   -1.7316 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3002   -0.5692   -2.0109 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.9601   -2.4659   -0.0413 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3163   -2.0637   -1.6173 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4330   -0.3963    0.9623 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0828   -1.0921    0.0871 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0514    1.2598   -0.0846 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6631    1.4249   -0.8135 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7740    0.0115   -2.7907 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0092    1.6223   -2.4828 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3336   -0.2116   -2.9806 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9630   -1.1509   -1.6067 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1138    0.6573   -0.0360 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5885    1.6003   -1.4465 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2238   -2.7385    0.7656 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2122   -2.7245   -1.0014 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.0436   -2.9971   -0.7399 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9259   -1.2777    2.0840 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5600    0.2222    1.2664 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.7328    1.4124    0.4532 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.5448   -0.9251    0.9268 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5852   -1.6374   -0.1982 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0003   -0.1140   -0.8917 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6916    1.1731    0.3820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3741   -0.0995   -0.6699 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6212   -1.6178    1.1747 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9090   -0.4530    2.3675 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2087   -0.5136    2.6475 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5554    1.6993    2.9011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4367    2.8313    2.1453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1302    2.9168    1.1004 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -12.7936    1.1968    0.9377 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -10.5109   -0.9889   -4.1080 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1295    0.3278   -2.9893 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
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  9 10  1  0
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 24 79  1  0
 25 80  1  0
 25 81  1  0
 26 82  1  0
 26 83  1  0
 27 84  1  0
 27 85  1  0
 28 86  1  0
 28 87  1  0
 29 88  1  1
 30 89  1  1
 31 90  1  0
 32 91  1  0
 32 92  1  0
 35 93  1  6
 36 94  1  0
 37 95  1  0
 38 96  1  1
 39 97  1  0
 40 98  1  0
 40 99  1  0
 41100  1  0
 41101  1  0
 42102  1  0
 42103  1  0
 43104  1  0
 43105  1  0
 44106  1  0
 44107  1  0
 44108  1  0
M  END


  Mrv1652309182107252D          

 44 44  0  0  1  0            999 V2000
    5.6307  -16.0019    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9162  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9162  -17.2394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2018  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4873  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7728  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0584  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3439  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6294  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0851  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7995  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5140  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2285  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9429  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6574  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3452  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0597  -16.0019    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.7741  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4886  -16.0019    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2031  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2031  -17.2394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.9175  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6320  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3465  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0609  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7754  -16.0019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4899  -16.4144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2044  -16.0019    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.2906  -15.1815    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   13.6775  -14.6294    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.0976  -15.0099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5101  -15.7244    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3305  -15.8106    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.9580  -16.3375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   15.1296  -17.1445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5165  -17.6965    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6880  -18.5035    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.0749  -19.0555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.4726  -18.7584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6441  -19.5654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4288  -19.8203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.6003  -20.6273    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.3849  -20.8822    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0597  -15.1769    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  1 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 28 27  1  1  0  0  0
 28 29  1  0  0  0  0
 29 30  1  1  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 32 34  1  0  0  0  0
 28 34  1  0  0  0  0
 34 35  1  6  0  0  0
 35 36  2  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  6  0  0  0
 37 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 17 44  1  1  0  0  0
M  END
> <DATABASE_ID>
HMDB0295011

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCCCCCCC(=O)OC[C@@H](O)COC(=O)CCCCCC[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C36H64O8/c1-3-5-7-8-9-10-11-12-13-18-22-35(41)43-27-30(38)28-44-36(42)23-19-15-14-17-21-31-32(34(40)26-33(31)39)25-24-29(37)20-16-6-4-2/h24-25,29-33,37-39H,3-23,26-28H2,1-2H3/b25-24+/t29-,30+,31+,32+,33-/m0/s1

> <INCHI_KEY>
OUQRCGOLZWBKRW-FEOQWCHYSA-N

> <FORMULA>
C36H64O8

> <MOLECULAR_WEIGHT>
624.9

> <EXACT_MASS>
624.460119021

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
108

> <JCHEM_AVERAGE_POLARIZABILITY>
77.3005767265839

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-2-hydroxy-3-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propyl tridecanoate

> <ALOGPS_LOGP>
6.65

> <JCHEM_LOGP>
7.999996802999999

> <ALOGPS_LOGS>
-5.92

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.296625429791927

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.526059888937432

> <JCHEM_PKA_STRONGEST_BASIC>
-1.597394312802559

> <JCHEM_POLAR_SURFACE_AREA>
130.36

> <JCHEM_REFRACTIVITY>
175.13080000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
30

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.55e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-2-hydroxy-3-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propyl tridecanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0295011
     RDKit          3D
DG(13:0/0:0/PGD1)
108108  0  0  0  0  0  0  0  0999 V2000
   15.0871    1.3248   -0.3798 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9339    1.2623   -1.3295 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5882    1.4056   -0.6402 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3845    0.2950    0.3800 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3904   -1.0529   -0.2522 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3106   -1.3606   -1.1924 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9276   -1.5513   -0.7632 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1050   -0.5640   -0.0769 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8338    0.7410   -0.7404 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1444    0.5952   -2.0755 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8296   -0.1027   -1.9722 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8173    0.5659   -1.0938 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5827   -0.2950   -1.1261 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7928   -0.1601   -2.0923 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2982   -1.2071   -0.1516 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1682   -2.0408   -0.1216 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8549   -1.3040   -0.0743 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8432   -2.2936   -0.0603 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7926   -0.5504    1.2597 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4744    0.0075    1.3391 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0487    0.7378    2.4115 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9055    0.9032    3.3579 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2863    1.3414    2.5731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2001    1.0393    1.4236 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4849   -0.4065    1.1898 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4348   -0.5547    0.0287 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7843    0.0821    0.2537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5078   -0.5178    1.4130 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8532    0.0137    1.7115 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.8577    1.4689    2.0327 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -7.3603    2.1731    0.8027 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.8399   -0.1732    0.5707 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.1161   -0.6013    1.2009 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2639    0.0880    1.0944 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5147   -0.3632    1.7327 C   0  0  1  0  0  0  0  0  0  0  0  0
  -11.6006    0.2239    3.0041 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7268    0.0585    0.9773 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9146   -0.4353   -0.4023 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8247   -0.0487   -1.3272 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1091   -0.5418   -2.7590 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9428   -0.0956   -3.6079 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1309    0.4710    0.3190 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.0149    1.2381   -1.0152 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.1136    2.3097    0.1355 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.9650    0.3175   -1.9094 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.0388    2.0919   -2.0565 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4780    2.4121   -0.2104 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8341    1.2815   -1.4341 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1506    0.3738    1.1954 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4316    0.5000    0.8611 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.3895   -1.2874   -0.7242 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.3937   -1.7867    0.6339 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6085   -2.3401   -1.7316 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3002   -0.5692   -2.0109 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.9601   -2.4659   -0.0413 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3163   -2.0637   -1.6173 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4330   -0.3963    0.9623 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0828   -1.0921    0.0871 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0514    1.2598   -0.0846 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6631    1.4249   -0.8135 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7740    0.0115   -2.7907 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0092    1.6223   -2.4828 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3336   -0.2116   -2.9806 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9630   -1.1509   -1.6067 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1138    0.6573   -0.0360 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5885    1.6003   -1.4465 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2238   -2.7385    0.7656 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2122   -2.7245   -1.0014 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7714   -0.6423   -0.9442 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0436   -2.9971   -0.7399 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9259   -1.2777    2.0840 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5600    0.2222    1.2664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7774    0.9142    3.4853 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2366    2.4538    2.6625 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0987    1.6711    1.5345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7328    1.4124    0.4532 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.5852   -1.6374   -0.1982 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0003   -0.1140   -0.8917 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6916    1.1731    0.3820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3741   -0.0995   -0.6699 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6212   -1.6178    1.1747 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9090   -0.4530    2.3675 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2087   -0.5136    2.6475 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5554    1.6993    2.9011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4367    2.8313    2.1453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1302    2.9168    1.1004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5097    2.7232    0.3474 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -9.1255   -1.5067    1.7704 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -11.5038   -1.4642    1.9379 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -13.0520   -1.5507   -0.3383 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8800    0.0014   -0.7802 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7095    1.0254   -1.3740 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8927   -0.6225   -1.0633 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0123   -0.0147   -3.0924 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2399   -1.6269   -2.7118 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2299    0.6913   -4.3343 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5109   -0.9889   -4.1080 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1295    0.3278   -2.9893 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 21 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  1  0
 30 32  1  0
 32 33  1  0
 33 34  2  0
 33 35  1  0
 35 36  1  0
 36 37  2  0
 37 38  1  0
 38 39  1  0
 38 40  1  0
 40 41  1  0
 41 42  1  0
 42 43  1  0
 43 44  1  0
 35 29  1  0
  1 45  1  0
  1 46  1  0
  1 47  1  0
  2 48  1  0
  2 49  1  0
  3 50  1  0
  3 51  1  0
  4 52  1  0
  4 53  1  0
  5 54  1  0
  5 55  1  0
  6 56  1  0
  6 57  1  0
  7 58  1  0
  7 59  1  0
  8 60  1  0
  8 61  1  0
  9 62  1  0
  9 63  1  0
 10 64  1  0
 10 65  1  0
 11 66  1  0
 11 67  1  0
 12 68  1  0
 12 69  1  0
 16 70  1  0
 16 71  1  0
 17 72  1  6
 18 73  1  0
 19 74  1  0
 19 75  1  0
 23 76  1  0
 23 77  1  0
 24 78  1  0
 24 79  1  0
 25 80  1  0
 25 81  1  0
 26 82  1  0
 26 83  1  0
 27 84  1  0
 27 85  1  0
 28 86  1  0
 28 87  1  0
 29 88  1  1
 30 89  1  1
 31 90  1  0
 32 91  1  0
 32 92  1  0
 35 93  1  6
 36 94  1  0
 37 95  1  0
 38 96  1  1
 39 97  1  0
 40 98  1  0
 40 99  1  0
 41100  1  0
 41101  1  0
 42102  1  0
 42103  1  0
 43104  1  0
 43105  1  0
 44106  1  0
 44107  1  0
 44108  1  0
M  END

HEADER    PROTEIN                                 18-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   18-SEP-21         0                                  
HETATM    1  O   UNK     0      10.511 -29.870   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       9.177 -30.640   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       9.177 -32.180   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       7.843 -29.870   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.510 -30.640   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.176 -29.870   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.842 -30.640   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.509 -29.870   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.175 -30.640   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.159 -29.870   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.492 -30.640   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.826 -29.870   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -4.160 -30.640   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -5.493 -29.870   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -6.827 -30.640   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      11.844 -30.640   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      13.178 -29.870   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      14.512 -30.640   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      15.845 -29.870   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      17.179 -30.640   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      17.179 -32.180   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      18.513 -29.870   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      19.846 -30.640   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      21.180 -29.870   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      22.514 -30.640   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      23.847 -29.870   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      25.181 -30.640   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      26.515 -29.870   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      26.676 -28.339   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      25.531 -27.308   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      28.182 -28.019   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      28.952 -29.352   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      30.484 -29.513   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      27.922 -30.497   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      28.242 -32.003   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      27.097 -33.033   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      27.418 -34.540   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0      26.273 -35.570   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      28.882 -35.016   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      29.202 -36.522   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      30.667 -36.998   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      30.987 -38.504   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      32.452 -38.980   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0      13.178 -28.330   0.000  0.00  0.00           O+0
CONECT    1    2   16                                                       
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16    1   17                                                       
CONECT   17   16   18   44                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   34                                                  
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   28   35                                                  
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38   39                                                  
CONECT   38   37                                                            
CONECT   39   37   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42                                                            
CONECT   44   17                                                            
MASTER        0    0    0    0    0    0    0    0   44    0   88    0
END

COMPND    HMDB0295011
HETATM    1  C1  UNL     1      15.087   1.325  -0.380  1.00  0.00           C  
HETATM    2  C2  UNL     1      13.934   1.262  -1.330  1.00  0.00           C  
HETATM    3  C3  UNL     1      12.588   1.406  -0.640  1.00  0.00           C  
HETATM    4  C4  UNL     1      12.385   0.295   0.380  1.00  0.00           C  
HETATM    5  C5  UNL     1      12.390  -1.053  -0.252  1.00  0.00           C  
HETATM    6  C6  UNL     1      11.311  -1.361  -1.192  1.00  0.00           C  
HETATM    7  C7  UNL     1       9.928  -1.551  -0.763  1.00  0.00           C  
HETATM    8  C8  UNL     1       9.105  -0.564  -0.077  1.00  0.00           C  
HETATM    9  C9  UNL     1       8.834   0.741  -0.740  1.00  0.00           C  
HETATM   10  C10 UNL     1       8.144   0.595  -2.075  1.00  0.00           C  
HETATM   11  C11 UNL     1       6.830  -0.103  -1.972  1.00  0.00           C  
HETATM   12  C12 UNL     1       5.817   0.566  -1.094  1.00  0.00           C  
HETATM   13  C13 UNL     1       4.583  -0.295  -1.126  1.00  0.00           C  
HETATM   14  O1  UNL     1       3.793  -0.160  -2.092  1.00  0.00           O  
HETATM   15  O2  UNL     1       4.298  -1.207  -0.152  1.00  0.00           O  
HETATM   16  C14 UNL     1       3.168  -2.041  -0.122  1.00  0.00           C  
HETATM   17  C15 UNL     1       1.855  -1.304  -0.074  1.00  0.00           C  
HETATM   18  O3  UNL     1       0.843  -2.294  -0.060  1.00  0.00           O  
HETATM   19  C16 UNL     1       1.793  -0.550   1.260  1.00  0.00           C  
HETATM   20  O4  UNL     1       0.474   0.007   1.339  1.00  0.00           O  
HETATM   21  C17 UNL     1       0.049   0.738   2.411  1.00  0.00           C  
HETATM   22  O5  UNL     1       0.905   0.903   3.358  1.00  0.00           O  
HETATM   23  C18 UNL     1      -1.286   1.341   2.573  1.00  0.00           C  
HETATM   24  C19 UNL     1      -2.200   1.039   1.424  1.00  0.00           C  
HETATM   25  C20 UNL     1      -2.485  -0.407   1.190  1.00  0.00           C  
HETATM   26  C21 UNL     1      -3.435  -0.555   0.029  1.00  0.00           C  
HETATM   27  C22 UNL     1      -4.784   0.082   0.254  1.00  0.00           C  
HETATM   28  C23 UNL     1      -5.508  -0.518   1.413  1.00  0.00           C  
HETATM   29  C24 UNL     1      -6.853   0.014   1.711  1.00  0.00           C  
HETATM   30  C25 UNL     1      -6.858   1.469   2.033  1.00  0.00           C  
HETATM   31  O6  UNL     1      -5.620   1.924   2.447  1.00  0.00           O  
HETATM   32  C26 UNL     1      -7.360   2.173   0.803  1.00  0.00           C  
HETATM   33  C27 UNL     1      -7.927   1.139  -0.106  1.00  0.00           C  
HETATM   34  O7  UNL     1      -8.365   1.424  -1.204  1.00  0.00           O  
HETATM   35  C28 UNL     1      -7.840  -0.173   0.571  1.00  0.00           C  
HETATM   36  C29 UNL     1      -9.116  -0.601   1.201  1.00  0.00           C  
HETATM   37  C30 UNL     1     -10.264   0.088   1.094  1.00  0.00           C  
HETATM   38  C31 UNL     1     -11.515  -0.363   1.733  1.00  0.00           C  
HETATM   39  O8  UNL     1     -11.601   0.224   3.004  1.00  0.00           O  
HETATM   40  C32 UNL     1     -12.727   0.058   0.977  1.00  0.00           C  
HETATM   41  C33 UNL     1     -12.915  -0.435  -0.402  1.00  0.00           C  
HETATM   42  C34 UNL     1     -11.825  -0.049  -1.327  1.00  0.00           C  
HETATM   43  C35 UNL     1     -12.109  -0.542  -2.759  1.00  0.00           C  
HETATM   44  C36 UNL     1     -10.943  -0.096  -3.608  1.00  0.00           C  
HETATM   45  H1  UNL     1      15.131   0.471   0.319  1.00  0.00           H  
HETATM   46  H2  UNL     1      16.015   1.238  -1.015  1.00  0.00           H  
HETATM   47  H3  UNL     1      15.114   2.310   0.135  1.00  0.00           H  
HETATM   48  H4  UNL     1      13.965   0.318  -1.909  1.00  0.00           H  
HETATM   49  H5  UNL     1      14.039   2.092  -2.056  1.00  0.00           H  
HETATM   50  H6  UNL     1      12.478   2.412  -0.210  1.00  0.00           H  
HETATM   51  H7  UNL     1      11.834   1.282  -1.434  1.00  0.00           H  
HETATM   52  H8  UNL     1      13.151   0.374   1.195  1.00  0.00           H  
HETATM   53  H9  UNL     1      11.432   0.500   0.861  1.00  0.00           H  
HETATM   54  H10 UNL     1      13.390  -1.287  -0.724  1.00  0.00           H  
HETATM   55  H11 UNL     1      12.394  -1.787   0.634  1.00  0.00           H  
HETATM   56  H12 UNL     1      11.608  -2.340  -1.732  1.00  0.00           H  
HETATM   57  H13 UNL     1      11.300  -0.569  -2.011  1.00  0.00           H  
HETATM   58  H14 UNL     1       9.960  -2.466  -0.041  1.00  0.00           H  
HETATM   59  H15 UNL     1       9.316  -2.064  -1.617  1.00  0.00           H  
HETATM   60  H16 UNL     1       9.433  -0.396   0.962  1.00  0.00           H  
HETATM   61  H17 UNL     1       8.083  -1.092   0.087  1.00  0.00           H  
HETATM   62  H18 UNL     1       8.051   1.260  -0.085  1.00  0.00           H  
HETATM   63  H19 UNL     1       9.663   1.425  -0.813  1.00  0.00           H  
HETATM   64  H20 UNL     1       8.774   0.011  -2.791  1.00  0.00           H  
HETATM   65  H21 UNL     1       8.009   1.622  -2.483  1.00  0.00           H  
HETATM   66  H22 UNL     1       6.334  -0.212  -2.981  1.00  0.00           H  
HETATM   67  H23 UNL     1       6.963  -1.151  -1.607  1.00  0.00           H  
HETATM   68  H24 UNL     1       6.114   0.657  -0.036  1.00  0.00           H  
HETATM   69  H25 UNL     1       5.589   1.600  -1.447  1.00  0.00           H  
HETATM   70  H26 UNL     1       3.224  -2.738   0.766  1.00  0.00           H  
HETATM   71  H27 UNL     1       3.212  -2.725  -1.001  1.00  0.00           H  
HETATM   72  H28 UNL     1       1.771  -0.642  -0.944  1.00  0.00           H  
HETATM   73  H29 UNL     1       1.044  -2.997  -0.740  1.00  0.00           H  
HETATM   74  H30 UNL     1       1.926  -1.278   2.084  1.00  0.00           H  
HETATM   75  H31 UNL     1       2.560   0.222   1.266  1.00  0.00           H  
HETATM   76  H32 UNL     1      -1.777   0.914   3.485  1.00  0.00           H  
HETATM   77  H33 UNL     1      -1.237   2.454   2.662  1.00  0.00           H  
HETATM   78  H34 UNL     1      -3.099   1.671   1.535  1.00  0.00           H  
HETATM   79  H35 UNL     1      -1.733   1.412   0.453  1.00  0.00           H  
HETATM   80  H36 UNL     1      -2.858  -0.931   2.098  1.00  0.00           H  
HETATM   81  H37 UNL     1      -1.545  -0.925   0.927  1.00  0.00           H  
HETATM   82  H38 UNL     1      -3.585  -1.637  -0.198  1.00  0.00           H  
HETATM   83  H39 UNL     1      -3.000  -0.114  -0.892  1.00  0.00           H  
HETATM   84  H40 UNL     1      -4.692   1.173   0.382  1.00  0.00           H  
HETATM   85  H41 UNL     1      -5.374  -0.100  -0.670  1.00  0.00           H  
HETATM   86  H42 UNL     1      -5.621  -1.618   1.175  1.00  0.00           H  
HETATM   87  H43 UNL     1      -4.909  -0.453   2.367  1.00  0.00           H  
HETATM   88  H44 UNL     1      -7.209  -0.514   2.647  1.00  0.00           H  
HETATM   89  H45 UNL     1      -7.555   1.699   2.901  1.00  0.00           H  
HETATM   90  H46 UNL     1      -5.437   2.831   2.145  1.00  0.00           H  
HETATM   91  H47 UNL     1      -8.130   2.917   1.100  1.00  0.00           H  
HETATM   92  H48 UNL     1      -6.510   2.723   0.347  1.00  0.00           H  
HETATM   93  H49 UNL     1      -7.504  -0.908  -0.161  1.00  0.00           H  
HETATM   94  H50 UNL     1      -9.125  -1.507   1.770  1.00  0.00           H  
HETATM   95  H51 UNL     1     -10.206   1.001   0.513  1.00  0.00           H  
HETATM   96  H52 UNL     1     -11.504  -1.464   1.938  1.00  0.00           H  
HETATM   97  H53 UNL     1     -10.721   0.170   3.475  1.00  0.00           H  
HETATM   98  H54 UNL     1     -13.673  -0.196   1.564  1.00  0.00           H  
HETATM   99  H55 UNL     1     -12.794   1.197   0.938  1.00  0.00           H  
HETATM  100  H56 UNL     1     -13.052  -1.551  -0.338  1.00  0.00           H  
HETATM  101  H57 UNL     1     -13.880   0.001  -0.780  1.00  0.00           H  
HETATM  102  H58 UNL     1     -11.709   1.025  -1.374  1.00  0.00           H  
HETATM  103  H59 UNL     1     -10.893  -0.623  -1.063  1.00  0.00           H  
HETATM  104  H60 UNL     1     -13.012  -0.015  -3.092  1.00  0.00           H  
HETATM  105  H61 UNL     1     -12.240  -1.627  -2.712  1.00  0.00           H  
HETATM  106  H62 UNL     1     -11.230   0.691  -4.334  1.00  0.00           H  
HETATM  107  H63 UNL     1     -10.511  -0.989  -4.108  1.00  0.00           H  
HETATM  108  H64 UNL     1     -10.130   0.328  -2.989  1.00  0.00           H  
CONECT    1    2   45   46   47
CONECT    2    3   48   49
CONECT    3    4   50   51
CONECT    4    5   52   53
CONECT    5    6   54   55
CONECT    6    7   56   57
CONECT    7    8   58   59
CONECT    8    9   60   61
CONECT    9   10   62   63
CONECT   10   11   64   65
CONECT   11   12   66   67
CONECT   12   13   68   69
CONECT   13   14   14   15
CONECT   15   16
CONECT   16   17   70   71
CONECT   17   18   19   72
CONECT   18   73
CONECT   19   20   74   75
CONECT   20   21
CONECT   21   22   22   23
CONECT   23   24   76   77
CONECT   24   25   78   79
CONECT   25   26   80   81
CONECT   26   27   82   83
CONECT   27   28   84   85
CONECT   28   29   86   87
CONECT   29   30   35   88
CONECT   30   31   32   89
CONECT   31   90
CONECT   32   33   91   92
CONECT   33   34   34   35
CONECT   35   36   93
CONECT   36   37   37   94
CONECT   37   38   95
CONECT   38   39   40   96
CONECT   39   97
CONECT   40   41   98   99
CONECT   41   42  100  101
CONECT   42   43  102  103
CONECT   43   44  104  105
CONECT   44  106  107  108
END

HMDB0295011
     RDKit          3D
DG(13:0/0:0/PGD1)
108108  0  0  0  0  0  0  0  0999 V2000
   15.0871    1.3248   -0.3798 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9339    1.2623   -1.3295 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5882    1.4056   -0.6402 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3845    0.2950    0.3800 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3904   -1.0529   -0.2522 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3106   -1.3606   -1.1924 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9276   -1.5513   -0.7632 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1050   -0.5640   -0.0769 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8338    0.7410   -0.7404 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1444    0.5952   -2.0755 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8296   -0.1027   -1.9722 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8173    0.5659   -1.0938 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5827   -0.2950   -1.1261 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7928   -0.1601   -2.0923 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2982   -1.2071   -0.1516 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1682   -2.0408   -0.1216 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8549   -1.3040   -0.0743 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8432   -2.2936   -0.0603 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7926   -0.5504    1.2597 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4744    0.0075    1.3391 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0487    0.7378    2.4115 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9055    0.9032    3.3579 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2863    1.3414    2.5731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2001    1.0393    1.4236 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4849   -0.4065    1.1898 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4348   -0.5547    0.0287 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7843    0.0821    0.2537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5078   -0.5178    1.4130 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8532    0.0137    1.7115 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.8577    1.4689    2.0327 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.6200    1.9244    2.4469 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3603    2.1731    0.8027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9274    1.1386   -0.1058 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3655    1.4243   -1.2035 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8399   -0.1732    0.5707 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.1161   -0.6013    1.2009 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2639    0.0880    1.0944 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5147   -0.3632    1.7327 C   0  0  1  0  0  0  0  0  0  0  0  0
  -11.6006    0.2239    3.0041 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7268    0.0585    0.9773 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9146   -0.4353   -0.4023 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8247   -0.0487   -1.3272 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1091   -0.5418   -2.7590 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9428   -0.0956   -3.6079 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1309    0.4710    0.3190 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.0149    1.2381   -1.0152 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.1136    2.3097    0.1355 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.9650    0.3175   -1.9094 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.0388    2.0919   -2.0565 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4780    2.4121   -0.2104 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8341    1.2815   -1.4341 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1506    0.3738    1.1954 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4316    0.5000    0.8611 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.3895   -1.2874   -0.7242 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.3937   -1.7867    0.6339 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6085   -2.3401   -1.7316 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3002   -0.5692   -2.0109 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.9601   -2.4659   -0.0413 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3163   -2.0637   -1.6173 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4330   -0.3963    0.9623 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0828   -1.0921    0.0871 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0514    1.2598   -0.0846 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6631    1.4249   -0.8135 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7740    0.0115   -2.7907 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0092    1.6223   -2.4828 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3336   -0.2116   -2.9806 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9630   -1.1509   -1.6067 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1138    0.6573   -0.0360 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5885    1.6003   -1.4465 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2238   -2.7385    0.7656 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2122   -2.7245   -1.0014 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7714   -0.6423   -0.9442 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0436   -2.9971   -0.7399 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9259   -1.2777    2.0840 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5600    0.2222    1.2664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7774    0.9142    3.4853 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2366    2.4538    2.6625 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0987    1.6711    1.5345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7328    1.4124    0.4532 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8583   -0.9306    2.0980 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5448   -0.9251    0.9268 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5852   -1.6374   -0.1982 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0003   -0.1140   -0.8917 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6916    1.1731    0.3820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3741   -0.0995   -0.6699 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6212   -1.6178    1.1747 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9090   -0.4530    2.3675 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2087   -0.5136    2.6475 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5554    1.6993    2.9011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4367    2.8313    2.1453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1302    2.9168    1.1004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5097    2.7232    0.3474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5039   -0.9085   -0.1613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1255   -1.5067    1.7704 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2058    1.0013    0.5132 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5038   -1.4642    1.9379 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7206    0.1699    3.4745 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.6725   -0.1960    1.5639 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7936    1.1968    0.9377 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0520   -1.5507   -0.3383 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8800    0.0014   -0.7802 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7095    1.0254   -1.3740 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8927   -0.6225   -1.0633 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0123   -0.0147   -3.0924 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2399   -1.6269   -2.7118 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2299    0.6913   -4.3343 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5109   -0.9889   -4.1080 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1295    0.3278   -2.9893 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
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 15 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 20 21  1  0
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 24 25  1  0
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 35 36  1  0
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 37 38  1  0
 38 39  1  0
 38 40  1  0
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 35 29  1  0
  1 45  1  0
  1 46  1  0
  1 47  1  0
  2 48  1  0
  2 49  1  0
  3 50  1  0
  3 51  1  0
  4 52  1  0
  4 53  1  0
  5 54  1  0
  5 55  1  0
  6 56  1  0
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  7 59  1  0
  8 60  1  0
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 41100  1  0
 41101  1  0
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 44108  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(2R)-2-Hydroxy-3-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propyl tridecanoic acid	HMDB

Chemical Formula

C₃₆H₆₄O₈

Average Molecular Weight

624.9

Monoisotopic Molecular Weight

624.460119021

IUPAC Name

(2R)-2-hydroxy-3-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propyl tridecanoate

Traditional Name

(2R)-2-hydroxy-3-({7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]heptanoyl}oxy)propyl tridecanoate

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCC(=O)OC[C@@H](O)COC(=O)CCCCCC[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

InChI Identifier

InChI=1S/C36H64O8/c1-3-5-7-8-9-10-11-12-13-18-22-35(41)43-27-30(38)28-44-36(42)23-19-15-14-17-21-31-32(34(40)26-33(31)39)25-24-29(37)20-16-6-4-2/h24-25,29-33,37-39H,3-23,26-28H2,1-2H3/b25-24+/t29-,30+,31+,32+,33-/m0/s1

InChI Key

OUQRCGOLZWBKRW-FEOQWCHYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Prostaglandins and related compounds

Alternative Parents

Substituents

Prostaglandin skeleton
Diradylglycerol
Diacylglycerol
1,3-acyl-sn-glycerol
Fatty alcohol
Glycerolipid
Fatty acid ester
Dicarboxylic acid or derivatives
Cyclopentanol
Cyclic alcohol
Cyclic ketone
Secondary alcohol
Ketone
Carboxylic acid ester
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Endogenous (HMDB: HMDB0295011)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	6.65	ALOGPS
logP	8	ChemAxon
logS	-5.9	ALOGPS
pKa (Strongest Acidic)	13.53	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	130.36 Å²	ChemAxon
Rotatable Bond Count	30	ChemAxon
Refractivity	175.13 m³·mol⁻¹	ChemAxon
Polarizability	77.3 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	260.548	32859911
AllCCS	[M+H-H2O]+	260.073	32859911
AllCCS	[M+Na]+	261.061	32859911
AllCCS	[M+NH4]+	260.952	32859911
AllCCS	[M-H]-	247.766	32859911
AllCCS	[M+Na-2H]-	252.17	32859911
AllCCS	[M+HCOO]-	257.123	32859911
DeepCCS	[M+H]+	250.263	30932474
DeepCCS	[M-H]-	248.438	30932474
DeepCCS	[M-2H]-	281.679	30932474
DeepCCS	[M+Na]+	255.868	30932474

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	9.71 minutes	32390414
Predicted by Siyang on May 30, 2022	23.8131 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	0.83 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	4590.4 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	257.8 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	300.5 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	186.2 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	778.1 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	1191.6 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	1027.6 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	185.0 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	2415.1 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	875.8 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	2489.7 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	764.4 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	619.2 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	260.4 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	345.5 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.5 seconds	40023050

Predicted Kovats Retention Indices

Not Available

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(13:0/0:0/PGD1) 10V, Negative-QTOF	splash10-000i-1029103000-619d665a34673b4c9116	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(13:0/0:0/PGD1) 20V, Negative-QTOF	splash10-000l-3029001000-59759205c96cbabc2572	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(13:0/0:0/PGD1) 40V, Negative-QTOF	splash10-01p9-4986000000-b06216992e447d89f5ff	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(13:0/0:0/PGD1) 10V, Positive-QTOF	splash10-000i-0011095000-324aa975d2c5edd71694	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(13:0/0:0/PGD1) 20V, Positive-QTOF	splash10-029i-5217971000-ec45993e95d3813bfa4d	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(13:0/0:0/PGD1) 40V, Positive-QTOF	splash10-05mp-9212100000-3935a8bb3afb7b63c481	2021-10-21	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

157003118

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details

1. Diacylglycerol kinase theta

General function:: Involved in diacylglycerol kinase activity
Specific function:: Phosphorylates diacylglycerol (DAG) to generate phosphatidic acid (PA). May regulate the activity of protein kinase C by controlling the balance between these two signaling lipids. Activated in the nucleus in response to alpha-thrombin and nerve growth factor. May be involved in cAMP- induced activation of NR5A1 and subsequent steroidogenic gene transcription by delivering PA as ligand for NR5A1. Acts synergistically with NR5A1 on CYP17 transcriptional activity
Gene Name:: DGKQ
Uniprot ID:: P52824
Molecular weight:: 101154.0

Enzyme Details

2. Pancreatic triacylglycerol lipase

General function:: Involved in catalytic activity
Specific function:: Not Available
Gene Name:: PNLIP
Uniprot ID:: P16233
Molecular weight:: 51156.48

Enzyme Details

3. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB1
Uniprot ID:: Q9NQ66
Molecular weight:: 138565.805

Enzyme Details

4. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. This form has a role in retina signal transduction.
Gene Name:: PLCB4
Uniprot ID:: Q15147
Molecular weight:: 136105.065

Enzyme Details

5. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB2
Uniprot ID:: Q00722
Molecular weight:: 134023.21

Enzyme Details

6. Diacylglycerol kinase gamma

General function:: Involved in diacylglycerol kinase activity
Specific function:: Reverses the normal flow of glycerolipid biosynthesis by phosphorylating diacylglycerol back to phosphatidic acid
Gene Name:: DGKG
Uniprot ID:: P49619
Molecular weight:: 89095.3

Enzyme Details

7. Hepatic triacylglycerol lipase

General function:: Involved in catalytic activity
Specific function:: Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin.
Gene Name:: LIPC
Uniprot ID:: P11150
Molecular weight:: 55914.1

Enzyme Details

8. Lysosomal acid lipase/cholesteryl ester hydrolase

General function:: Involved in lipid metabolic process
Specific function:: Crucial for the intracellular hydrolysis of cholesteryl esters and triglycerides that have been internalized via receptor-mediated endocytosis of lipoprotein particles. Important in mediating the effect of LDL (low density lipoprotein) uptake on suppression of hydroxymethylglutaryl-CoA reductase and activation of endogenous cellular cholesteryl ester formation.
Gene Name:: LIPA
Uniprot ID:: P38571
Molecular weight:: 45418.71

Enzyme Details

9. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB3
Uniprot ID:: Q01970
Molecular weight:: 138797.725

Enzyme Details

10. Inactive pancreatic lipase-related protein 1

General function:: Involved in catalytic activity
Specific function:: May function as inhibitor of dietary triglyceride digestion. Lacks detectable lipase activity towards triglycerides, diglycerides, phosphatidylcholine, galactolipids or cholesterol esters (in vitro) (By similarity).
Gene Name:: PNLIPRP1
Uniprot ID:: P54315
Molecular weight:: Not Available

Transporters

Enzyme Details

1. Long-chain fatty acid transport protein 1

General function:: Lipid transport and metabolism
Specific function:: Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane- associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids
Gene Name:: SLC27A1
Uniprot ID:: Q6PCB7
Molecular weight:: 71107.5

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters

Showing metabocard for DG(13:0/0:0/PGD1) (HMDB0295011)

MOL for HMDB0295011 (DG(13:0/0:0/PGD1))

3D MOL for HMDB0295011 (DG(13:0/0:0/PGD1))

3D SDF for HMDB0295011 (DG(13:0/0:0/PGD1))

3D-SDF for HMDB0295011 (DG(13:0/0:0/PGD1))

PDB for HMDB0295011 (DG(13:0/0:0/PGD1))

3D PDB for HMDB0295011 (DG(13:0/0:0/PGD1))

SMILES for HMDB0295011 (DG(13:0/0:0/PGD1))

INCHI for HMDB0295011 (DG(13:0/0:0/PGD1))

Structure for HMDB0295011 (DG(13:0/0:0/PGD1))

3D Structure for HMDB0295011 (DG(13:0/0:0/PGD1))

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

MS/MS Spectra

Enzymes

Transporters