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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 23:44:16 UTC
Update Date2021-09-26 23:18:09 UTC
HMDB IDHMDB0260183
Secondary Accession NumbersNone
Metabolite Identification
Common Name(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione
Description(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione belongs to the class of organic compounds known as androstane steroids. These are steroids with a structure based on the 19-carbon androstane skeleton. Based on a literature review a significant number of articles have been published on (8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione. This compound has been identified in human blood as reported by (PMID: 31557052 ). (8s,9r,10s,13s,14s)-10,13-dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1h-cyclopenta[a]phenanthrene-11,17-dione is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically (8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC19H28O2
Average Molecular Weight288.431
Monoisotopic Molecular Weight288.208930142
IUPAC Name2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecane-14,17-dione
Traditional Name2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecane-14,17-dione
CAS Registry NumberNot Available
SMILES
CC12CC(=O)C3C(CCC4CCCCC34C)C1CCC2=O
InChI Identifier
InChI=1S/C19H28O2/c1-18-10-4-3-5-12(18)6-7-13-14-8-9-16(21)19(14,2)11-15(20)17(13)18/h12-14,17H,3-11H2,1-2H3
InChI KeyRAVRUVQHJXISRT-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as androstane steroids. These are steroids with a structure based on the 19-carbon androstane skeleton.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassAndrostane steroids
Direct ParentAndrostane steroids
Alternative Parents
Substituents
  • Androstane-skeleton
  • Oxosteroid
  • 17-oxosteroid
  • 11-oxosteroid
  • Ketone
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP3.71ALOGPS
logP4.23ChemAxon
logS-4.9ALOGPS
pKa (Strongest Acidic)18.09ChemAxon
pKa (Strongest Basic)-7.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area34.14 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity82.81 m³·mol⁻¹ChemAxon
Polarizability33.55 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+172.64932859911
AllCCS[M+H-H2O]+169.48932859911
AllCCS[M+Na]+176.41632859911
AllCCS[M+NH4]+175.57632859911
AllCCS[M-H]-178.82232859911
AllCCS[M+Na-2H]-178.88232859911
AllCCS[M+HCOO]-179.08332859911
DeepCCS[M-2H]-204.20530932474
DeepCCS[M+Na]+179.61530932474

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. 6.26 minutes32390414
Predicted by Siyang on May 30, 202218.3544 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.67 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2722.3 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid536.2 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid228.6 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid242.0 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid521.8 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid721.7 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid808.9 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)87.2 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1519.1 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid493.3 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1601.2 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid436.4 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid456.7 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate382.8 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA433.8 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water12.3 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dioneCC12CC(=O)C3C(CCC4CCCCC34C)C1CCC2=O2711.8Standard polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dioneCC12CC(=O)C3C(CCC4CCCCC34C)C1CCC2=O2382.1Standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dioneCC12CC(=O)C3C(CCC4CCCCC34C)C1CCC2=O2489.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TMS,isomer #1CC12CCCCC1CCC1C2=C(O[Si](C)(C)C)CC2(C)C(=O)CCC122540.1Semi standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TMS,isomer #1CC12CCCCC1CCC1C2=C(O[Si](C)(C)C)CC2(C)C(=O)CCC122386.4Standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TMS,isomer #1CC12CCCCC1CCC1C2=C(O[Si](C)(C)C)CC2(C)C(=O)CCC122899.8Standard polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TMS,isomer #2CC12C=C(O[Si](C)(C)C)C3C(CCC4CCCCC43C)C1CCC2=O2448.6Semi standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TMS,isomer #2CC12C=C(O[Si](C)(C)C)C3C(CCC4CCCCC43C)C1CCC2=O2320.2Standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TMS,isomer #2CC12C=C(O[Si](C)(C)C)C3C(CCC4CCCCC43C)C1CCC2=O2935.8Standard polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TMS,isomer #3CC12CC(=O)C3C(CCC4CCCCC43C)C1CC=C2O[Si](C)(C)C2571.9Semi standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TMS,isomer #3CC12CC(=O)C3C(CCC4CCCCC43C)C1CC=C2O[Si](C)(C)C2324.0Standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TMS,isomer #3CC12CC(=O)C3C(CCC4CCCCC43C)C1CC=C2O[Si](C)(C)C2837.3Standard polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,2TMS,isomer #1CC12CCCCC1CCC1C2=C(O[Si](C)(C)C)CC2(C)C(O[Si](C)(C)C)=CCC122537.3Semi standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,2TMS,isomer #1CC12CCCCC1CCC1C2=C(O[Si](C)(C)C)CC2(C)C(O[Si](C)(C)C)=CCC122411.3Standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,2TMS,isomer #1CC12CCCCC1CCC1C2=C(O[Si](C)(C)C)CC2(C)C(O[Si](C)(C)C)=CCC122896.0Standard polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,2TMS,isomer #2CC12C=C(O[Si](C)(C)C)C3C(CCC4CCCCC43C)C1CC=C2O[Si](C)(C)C2421.5Semi standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,2TMS,isomer #2CC12C=C(O[Si](C)(C)C)C3C(CCC4CCCCC43C)C1CC=C2O[Si](C)(C)C2349.4Standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,2TMS,isomer #2CC12C=C(O[Si](C)(C)C)C3C(CCC4CCCCC43C)C1CC=C2O[Si](C)(C)C2971.1Standard polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TBDMS,isomer #1CC12CCCCC1CCC1C2=C(O[Si](C)(C)C(C)(C)C)CC2(C)C(=O)CCC122776.5Semi standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TBDMS,isomer #1CC12CCCCC1CCC1C2=C(O[Si](C)(C)C(C)(C)C)CC2(C)C(=O)CCC122657.9Standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TBDMS,isomer #1CC12CCCCC1CCC1C2=C(O[Si](C)(C)C(C)(C)C)CC2(C)C(=O)CCC123060.6Standard polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TBDMS,isomer #2CC12C=C(O[Si](C)(C)C(C)(C)C)C3C(CCC4CCCCC43C)C1CCC2=O2685.7Semi standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TBDMS,isomer #2CC12C=C(O[Si](C)(C)C(C)(C)C)C3C(CCC4CCCCC43C)C1CCC2=O2523.7Standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TBDMS,isomer #2CC12C=C(O[Si](C)(C)C(C)(C)C)C3C(CCC4CCCCC43C)C1CCC2=O3096.9Standard polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TBDMS,isomer #3CC12CC(=O)C3C(CCC4CCCCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C2820.9Semi standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TBDMS,isomer #3CC12CC(=O)C3C(CCC4CCCCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C2474.1Standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,1TBDMS,isomer #3CC12CC(=O)C3C(CCC4CCCCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C3000.9Standard polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,2TBDMS,isomer #1CC12CCCCC1CCC1C2=C(O[Si](C)(C)C(C)(C)C)CC2(C)C(O[Si](C)(C)C(C)(C)C)=CCC123013.0Semi standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,2TBDMS,isomer #1CC12CCCCC1CCC1C2=C(O[Si](C)(C)C(C)(C)C)CC2(C)C(O[Si](C)(C)C(C)(C)C)=CCC122701.3Standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,2TBDMS,isomer #1CC12CCCCC1CCC1C2=C(O[Si](C)(C)C(C)(C)C)CC2(C)C(O[Si](C)(C)C(C)(C)C)=CCC123146.2Standard polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,2TBDMS,isomer #2CC12C=C(O[Si](C)(C)C(C)(C)C)C3C(CCC4CCCCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C2900.1Semi standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,2TBDMS,isomer #2CC12C=C(O[Si](C)(C)C(C)(C)C)C3C(CCC4CCCCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C2649.7Standard non polar33892256
(8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione,2TBDMS,isomer #2CC12C=C(O[Si](C)(C)C(C)(C)C)C3C(CCC4CCCCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C3218.5Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione GC-MS (Non-derivatized) - 70eV, Positivesplash10-08mj-2590000000-69e6b96ef0de078cd8412021-09-24Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (8S,9R,10S,13S,14S)-10,13-Dimethyl-2,3,4,5,6,7,8,9,12,14,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-11,17-dione GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID3859364
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound4670795
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]