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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 23:44:06 UTC

Update Date

2021-09-26 23:18:08 UTC

HMDB ID

HMDB0260181

Secondary Accession Numbers

None

Metabolite Identification

Common Name

(8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene

Description

(8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene belongs to the class of organic compounds known as androstane steroids. These are steroids with a structure based on the 19-carbon androstane skeleton. Based on a literature review very few articles have been published on (8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene. This compound has been identified in human blood as reported by (PMID: 31557052 ). (8s,9r,10r,13s,14s)-10,13-dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3h-cyclopenta[a]phenanthrene is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically (8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0260181
     RDKit          3D
(8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-...
 49 52  0  0  0  0  0  0  0  0999 V2000
    2.4091   -0.4167    1.6366 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4961   -0.5867    0.1699 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9362   -0.3576   -0.2483 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0456    1.1587   -0.3649 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6229    1.7016   -0.2290 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8300    0.5196   -0.6362 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3774    0.5728   -0.5288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1661    1.7803    0.2276 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6221    1.8804   -0.0813 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2265    0.6512   -0.6810 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7256    0.7288   -0.4769 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1082    0.5822    0.9577 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5070   -0.6580    1.4807 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4421   -1.1773    0.9460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7088   -0.6361   -0.2049 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9388   -1.6583   -1.3373 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652309122101442D          

 19 22  0  0  0  0            999 V2000
    3.5330   -3.2587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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  3  4  1  0  0  0  0
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 15 19  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0260181

> <DATABASE_NAME>
hmdb

> <SMILES>
CC12CCCC1C1CCC3CCC=CC3(C)C1CC2

> <INCHI_IDENTIFIER>
InChI=1S/C19H30/c1-18-11-5-7-16(18)15-9-8-14-6-3-4-12-19(14,2)17(15)10-13-18/h4,12,14-17H,3,5-11,13H2,1-2H3

> <INCHI_KEY>
VYLBHVHOLJBIFH-UHFFFAOYSA-N

> <FORMULA>
C19H30

> <MOLECULAR_WEIGHT>
258.449

> <EXACT_MASS>
258.234750966

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
49

> <JCHEM_AVERAGE_POLARIZABILITY>
32.85762676670791

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-3-ene

> <ALOGPS_LOGP>
6.06

> <JCHEM_LOGP>
5.459364768333334

> <ALOGPS_LOGS>
-7.00

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
82.5628

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.58e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-3-ene

> <JCHEM_VEBER_RULE>
1

$$$$

HMDB0260181
     RDKit          3D
(8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-...
 49 52  0  0  0  0  0  0  0  0999 V2000
    2.4091   -0.4167    1.6366 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4961   -0.5867    0.1699 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9362   -0.3576   -0.2483 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0456    1.1587   -0.3649 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6229    1.7016   -0.2290 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8300    0.5196   -0.6362 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3774    0.5728   -0.5288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1661    1.7803    0.2276 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6221    1.8804   -0.0813 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2265    0.6512   -0.6810 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.7088   -0.6361   -0.2049 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9388   -1.6583   -1.3373 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.4503   -1.9184   -0.1624 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -1.8661   -0.3370 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4342   -0.4578    2.1137 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9021   -1.3365    2.0551 H   0  0  0  0  0  0  0  0  0  0  0  0
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 19 48  1  0
 19 49  1  0
M  END

HEADER    PROTEIN                                 12-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-21         0                                  
HETATM    1  C   UNK     0       6.595  -6.083   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.267  -4.697   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.727  -4.647   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.299  -3.168   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.574  -2.304   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.790  -3.249   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.306  -2.978   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.829  -1.529   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      11.345  -1.258   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      12.338  -2.436   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      13.854  -2.164   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      14.846  -3.342   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      14.323  -4.790   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      12.807  -5.061   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      11.814  -3.884   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.299  -4.155   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.775  -5.603   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       8.259  -5.874   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      11.291  -5.332   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    6   18                                             
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    2    7                                                  
CONECT    7    6    8   16                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   15                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   10   16   19                                             
CONECT   16   15    7   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17    2                                                       
CONECT   19   15                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   44    0
END

COMPND    HMDB0260181
HETATM    1  C1  UNL     1       2.409  -0.417   1.637  1.00  0.00           C  
HETATM    2  C2  UNL     1       2.496  -0.587   0.170  1.00  0.00           C  
HETATM    3  C3  UNL     1       3.936  -0.358  -0.248  1.00  0.00           C  
HETATM    4  C4  UNL     1       4.046   1.159  -0.365  1.00  0.00           C  
HETATM    5  C5  UNL     1       2.623   1.702  -0.229  1.00  0.00           C  
HETATM    6  C6  UNL     1       1.830   0.520  -0.636  1.00  0.00           C  
HETATM    7  C7  UNL     1       0.377   0.573  -0.529  1.00  0.00           C  
HETATM    8  C8  UNL     1      -0.166   1.780   0.228  1.00  0.00           C  
HETATM    9  C9  UNL     1      -1.622   1.880  -0.081  1.00  0.00           C  
HETATM   10  C10 UNL     1      -2.226   0.651  -0.681  1.00  0.00           C  
HETATM   11  C11 UNL     1      -3.726   0.729  -0.477  1.00  0.00           C  
HETATM   12  C12 UNL     1      -4.108   0.582   0.958  1.00  0.00           C  
HETATM   13  C13 UNL     1      -3.507  -0.658   1.481  1.00  0.00           C  
HETATM   14  C14 UNL     1      -2.442  -1.177   0.946  1.00  0.00           C  
HETATM   15  C15 UNL     1      -1.709  -0.636  -0.205  1.00  0.00           C  
HETATM   16  C16 UNL     1      -1.939  -1.658  -1.337  1.00  0.00           C  
HETATM   17  C17 UNL     1      -0.225  -0.636   0.114  1.00  0.00           C  
HETATM   18  C18 UNL     1       0.450  -1.918  -0.162  1.00  0.00           C  
HETATM   19  C19 UNL     1       1.923  -1.866  -0.337  1.00  0.00           C  
HETATM   20  H1  UNL     1       3.434  -0.458   2.114  1.00  0.00           H  
HETATM   21  H2  UNL     1       1.902  -1.337   2.055  1.00  0.00           H  
HETATM   22  H3  UNL     1       1.952   0.499   2.002  1.00  0.00           H  
HETATM   23  H4  UNL     1       4.616  -0.671   0.569  1.00  0.00           H  
HETATM   24  H5  UNL     1       4.170  -0.853  -1.213  1.00  0.00           H  
HETATM   25  H6  UNL     1       4.378   1.393  -1.396  1.00  0.00           H  
HETATM   26  H7  UNL     1       4.709   1.579   0.410  1.00  0.00           H  
HETATM   27  H8  UNL     1       2.486   2.589  -0.898  1.00  0.00           H  
HETATM   28  H9  UNL     1       2.476   2.053   0.790  1.00  0.00           H  
HETATM   29  H10 UNL     1       2.123   0.289  -1.706  1.00  0.00           H  
HETATM   30  H11 UNL     1      -0.085   0.654  -1.557  1.00  0.00           H  
HETATM   31  H12 UNL     1       0.396   2.712  -0.070  1.00  0.00           H  
HETATM   32  H13 UNL     1      -0.060   1.599   1.313  1.00  0.00           H  
HETATM   33  H14 UNL     1      -1.735   2.707  -0.844  1.00  0.00           H  
HETATM   34  H15 UNL     1      -2.156   2.257   0.815  1.00  0.00           H  
HETATM   35  H16 UNL     1      -2.097   0.703  -1.805  1.00  0.00           H  
HETATM   36  H17 UNL     1      -4.288  -0.004  -1.070  1.00  0.00           H  
HETATM   37  H18 UNL     1      -4.028   1.735  -0.882  1.00  0.00           H  
HETATM   38  H19 UNL     1      -3.874   1.471   1.578  1.00  0.00           H  
HETATM   39  H20 UNL     1      -5.219   0.459   1.037  1.00  0.00           H  
HETATM   40  H21 UNL     1      -4.001  -1.135   2.354  1.00  0.00           H  
HETATM   41  H22 UNL     1      -2.021  -2.114   1.371  1.00  0.00           H  
HETATM   42  H23 UNL     1      -1.290  -1.475  -2.194  1.00  0.00           H  
HETATM   43  H24 UNL     1      -2.986  -1.436  -1.701  1.00  0.00           H  
HETATM   44  H25 UNL     1      -1.980  -2.683  -0.959  1.00  0.00           H  
HETATM   45  H26 UNL     1      -0.168  -0.454   1.228  1.00  0.00           H  
HETATM   46  H27 UNL     1       0.042  -2.491  -1.042  1.00  0.00           H  
HETATM   47  H28 UNL     1       0.246  -2.608   0.710  1.00  0.00           H  
HETATM   48  H29 UNL     1       2.193  -1.937  -1.430  1.00  0.00           H  
HETATM   49  H30 UNL     1       2.447  -2.708   0.174  1.00  0.00           H  
CONECT    1    2   20   21   22
CONECT    2    3    6   19
CONECT    3    4   23   24
CONECT    4    5   25   26
CONECT    5    6   27   28
CONECT    6    7   29
CONECT    7    8   17   30
CONECT    8    9   31   32
CONECT    9   10   33   34
CONECT   10   11   15   35
CONECT   11   12   36   37
CONECT   12   13   38   39
CONECT   13   14   14   40
CONECT   14   15   41
CONECT   15   16   17
CONECT   16   42   43   44
CONECT   17   18   45
CONECT   18   19   46   47
CONECT   19   48   49
END

HMDB0260181
     RDKit          3D
(8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-...
 49 52  0  0  0  0  0  0  0  0999 V2000
    2.4091   -0.4167    1.6366 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4961   -0.5867    0.1699 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9362   -0.3576   -0.2483 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0456    1.1587   -0.3649 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6229    1.7016   -0.2290 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8300    0.5196   -0.6362 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3774    0.5728   -0.5288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1661    1.7803    0.2276 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6221    1.8804   -0.0813 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2265    0.6512   -0.6810 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7256    0.7288   -0.4769 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1082    0.5822    0.9577 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5070   -0.6580    1.4807 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4421   -1.1773    0.9460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7088   -0.6361   -0.2049 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9388   -1.6583   -1.3373 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2252   -0.6363    0.1136 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4503   -1.9184   -0.1624 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -1.8661   -0.3370 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4342   -0.4578    2.1137 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9021   -1.3365    2.0551 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9524    0.4988    2.0023 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6155   -0.6712    0.5694 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1699   -0.8526   -1.2132 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3778    1.3928   -1.3964 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7091    1.5790    0.4104 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4857    2.5893   -0.8977 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4755    2.0529    0.7903 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1228    0.2892   -1.7061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0850    0.6543   -1.5573 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3964    2.7123   -0.0697 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0601    1.5985    1.3130 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7348    2.7074   -0.8439 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1558    2.2573    0.8150 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0971    0.7025   -1.8047 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2884   -0.0039   -1.0698 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0280    1.7355   -0.8817 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8740    1.4708    1.5781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2194    0.4587    1.0365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0009   -1.1354    2.3545 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0212   -2.1136    1.3712 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2904   -1.4750   -2.1937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9860   -1.4360   -1.7014 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9803   -2.6835   -0.9592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1679   -0.4539    1.2283 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0421   -2.4913   -1.0424 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2457   -2.6078    0.7104 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1928   -1.9370   -1.4295 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4471   -2.7079    0.1745 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
  6  2  1  0
 17  7  1  0
 19  2  1  0
 15 10  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  3 23  1  0
  3 24  1  0
  4 25  1  0
  4 26  1  0
  5 27  1  0
  5 28  1  0
  6 29  1  0
  7 30  1  0
  8 31  1  0
  8 32  1  0
  9 33  1  0
  9 34  1  0
 10 35  1  0
 11 36  1  0
 11 37  1  0
 12 38  1  0
 12 39  1  0
 13 40  1  0
 14 41  1  0
 16 42  1  0
 16 43  1  0
 16 44  1  0
 17 45  1  0
 18 46  1  0
 18 47  1  0
 19 48  1  0
 19 49  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₁₉H₃₀

Average Molecular Weight

258.449

Monoisotopic Molecular Weight

258.234750966

IUPAC Name

2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-3-ene

Traditional Name

2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-3-ene

CAS Registry Number

Not Available

SMILES

CC12CCCC1C1CCC3CCC=CC3(C)C1CC2

InChI Identifier

InChI=1S/C19H30/c1-18-11-5-7-16(18)15-9-8-14-6-3-4-12-19(14,2)17(15)10-13-18/h4,12,14-17H,3,5-11,13H2,1-2H3

InChI Key

VYLBHVHOLJBIFH-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as androstane steroids. These are steroids with a structure based on the 19-carbon androstane skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Androstane steroids

Direct Parent

Androstane steroids

Alternative Parents

Substituents

Androstane-skeleton
Delta-1-steroid
Polycyclic hydrocarbon
Cyclic olefin
Unsaturated aliphatic hydrocarbon
Unsaturated hydrocarbon
Olefin
Hydrocarbon
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	6.06	ALOGPS
logP	5.46	ChemAxon
logS	-7	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	82.56 m³·mol⁻¹	ChemAxon
Polarizability	32.86 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	167.66	32859911
AllCCS	[M+H-H2O]+	164.242	32859911
AllCCS	[M+Na]+	171.744	32859911
AllCCS	[M+NH4]+	170.831	32859911
AllCCS	[M-H]-	175.5	32859911
AllCCS	[M+Na-2H]-	175.559	32859911
AllCCS	[M+HCOO]-	175.753	32859911
DeepCCS	[M-2H]-	197.138	30932474
DeepCCS	[M+Na]+	172.157	30932474

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022.	6.59 minutes	32390414
Predicted by Siyang on May 30, 2022	24.4403 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	2.65 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	2976.0 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	823.2 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	299.5 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	459.8 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	664.7 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	1013.3 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	979.2 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	122.3 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	2074.6 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	625.3 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1833.0 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	759.2 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	601.4 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	655.2 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	718.7 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.1 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene	CC12CCCC1C1CCC3CCC=CC3(C)C1CC2	2424.5	Standard polar	33892256
(8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene	CC12CCCC1C1CCC3CCC=CC3(C)C1CC2	2077.4	Standard non polar	33892256
(8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene	CC12CCCC1C1CCC3CCC=CC3(C)C1CC2	2029.1	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - (8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene GC-MS (Non-derivatized) - 70eV, Positive	splash10-0036-2690000000-60dcae2add4db7b19848	2021-09-23	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

3434725

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

4225618

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for (8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene (HMDB0260181)

MOL for HMDB0260181 ((8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene)

3D MOL for HMDB0260181 ((8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene)

3D SDF for HMDB0260181 ((8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene)

3D-SDF for HMDB0260181 ((8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene)

PDB for HMDB0260181 ((8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene)

3D PDB for HMDB0260181 ((8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene)

SMILES for HMDB0260181 ((8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene)

INCHI for HMDB0260181 ((8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene)

Structure for HMDB0260181 ((8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene)

3D Structure for HMDB0260181 ((8S,9R,10R,13S,14S)-10,13-Dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra