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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 18:42:10 UTC

Update Date

2021-09-26 23:14:11 UTC

HMDB ID

HMDB0257670

Secondary Accession Numbers

None

Metabolite Identification

Common Name

(5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid

Description

Resolvin E1 belongs to the class of organic compounds known as hydroxyeicosapentaenoic acids. These are eicosanoic acids with an attached hydroxyl group and five CC double bonds. Based on a literature review a significant number of articles have been published on Resolvin E1. This compound has been identified in human blood as reported by (PMID: 31557052 ). (5s,12r,18r)-5,12,18-trihydroxyicosa-6,8,10,14,16-pentaenoic acid is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0257670
     RDKit          3D
(5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid
 55 54  0  0  0  0  0  0  0  0999 V2000
    8.7851    1.0780    0.7572 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1792    0.1305    1.7640 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7106   -0.0436    1.3984 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6857   -0.5719    0.1067 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0013    1.2510    1.4169 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6999    1.2773    1.2231 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9923    0.0267    0.9960 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6935   -0.0086    0.7948 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0249   -1.3085    0.5689 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9905   -1.4462    1.6937 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2682   -2.6099    1.6331 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2126   -0.2081    1.7196 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7805    0.0791    0.9454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2624   -0.8132   -0.0726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2614   -0.5153   -0.8581 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9738    0.7259   -0.7870 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9997    1.0166   -1.6113 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5002    0.1265   -2.6506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9443    0.9219   -3.7248 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4664   -0.9184   -2.2731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7644   -0.5501   -1.6949 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8075    0.2053   -0.4243 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2711    0.3938   -0.0898 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0324   -0.6024    0.0021 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7937    1.6583    0.1163 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9903    1.6437    0.2358 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4067    0.5528    0.0094 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3950    1.8205    1.3395 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3204    0.4855    2.8075 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6292   -0.9012    1.6626 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2475   -0.7814    2.0947 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2105    0.0331   -0.5315 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5596    2.1560    1.5903 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1410    2.2251    1.2335 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5426   -0.8969    0.9903 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0936    0.8889    0.7881 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7722   -2.1292    0.6339 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5392   -1.3711   -0.4006 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6400   -1.5348    2.6380 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7636   -3.3783    1.2955 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5207    0.5374    2.4778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2917    1.0629    1.0687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7646   -1.7887   -0.1895 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5740   -1.2648   -1.6121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7385    1.5077   -0.0732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4474    2.0092   -1.4655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6073   -0.4138   -3.0961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4490    1.7796   -3.6989 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9107   -1.6836   -1.6473 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6719   -1.5121   -3.2219 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3410   -1.5106   -1.5303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3866    0.0015   -2.4428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3590    1.2000   -0.4687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4090   -0.3864    0.4544 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2074    2.3542    0.5258 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  2  3
  6  7  1  0
  7  8  2  3
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  2  3
 13 14  1  0
 14 15  2  3
 15 16  1  0
 16 17  2  3
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  2  0
 23 25  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  0
  2 30  1  0
  3 31  1  0
  4 32  1  0
  5 33  1  0
  6 34  1  0
  7 35  1  0
  8 36  1  0
  9 37  1  0
  9 38  1  0
 10 39  1  0
 11 40  1  0
 12 41  1  0
 13 42  1  0
 14 43  1  0
 15 44  1  0
 16 45  1  0
 17 46  1  0
 18 47  1  0
 19 48  1  0
 20 49  1  0
 20 50  1  0
 21 51  1  0
 21 52  1  0
 22 53  1  0
 22 54  1  0
 25 55  1  0
M  END


  Mrv0541 02251203112D          

 25 24  0  0  0  0            999 V2000
   -3.2408   10.5039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5263   10.0914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5263    9.2664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2408    8.8539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8118    8.8539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8118    8.0289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0974    7.6164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0974    6.7914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3829    6.3789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3829    5.5539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0974    5.1414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3316    5.1414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3316    4.3164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0461    3.9039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0461    3.0789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  3  1  4  0  0  0
  5  6  2  0  0  0  0
  7  6  1  4  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 12 10  1  4  0  0  0
 12 13  2  0  0  0  0
 14 13  1  4  0  0  0
 14 15  2  0  0  0  0
 16 15  1  4  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  2  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0257670

> <DATABASE_NAME>
hmdb

> <SMILES>
CCC(O)C=CC=CCC(O)C=CC=CC=CC(O)CCCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H30O5/c1-2-17(21)11-8-5-9-14-18(22)12-6-3-4-7-13-19(23)15-10-16-20(24)25/h3-9,11-13,17-19,21-23H,2,10,14-16H2,1H3,(H,24,25)

> <INCHI_KEY>
AOPOCGPBAIARAV-UHFFFAOYSA-N

> <FORMULA>
C20H30O5

> <MOLECULAR_WEIGHT>
350.4492

> <EXACT_MASS>
350.20932407

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_AVERAGE_POLARIZABILITY>
41.81628645055088

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5,12,18-trihydroxyicosa-6,8,10,14,16-pentaenoic acid

> <ALOGPS_LOGP>
4.24

> <JCHEM_LOGP>
2.5328159533333334

> <ALOGPS_LOGS>
-3.89

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
17.606923475356155

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.6463452057547805

> <JCHEM_PKA_STRONGEST_BASIC>
-1.1142068120274042

> <JCHEM_POLAR_SURFACE_AREA>
97.99000000000001

> <JCHEM_REFRACTIVITY>
105.61710000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.50e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5,12,18-trihydroxyicosa-6,8,10,14,16-pentaenoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0257670
     RDKit          3D
(5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid
 55 54  0  0  0  0  0  0  0  0999 V2000
    8.7851    1.0780    0.7572 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1792    0.1305    1.7640 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7106   -0.0436    1.3984 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6857   -0.5719    0.1067 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0013    1.2510    1.4169 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6999    1.2773    1.2231 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9923    0.0267    0.9960 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6935   -0.0086    0.7948 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0249   -1.3085    0.5689 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9905   -1.4462    1.6937 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2682   -2.6099    1.6331 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2126   -0.2081    1.7196 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7805    0.0791    0.9454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2624   -0.8132   -0.0726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2614   -0.5153   -0.8581 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9738    0.7259   -0.7870 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9997    1.0166   -1.6113 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5002    0.1265   -2.6506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9443    0.9219   -3.7248 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4664   -0.9184   -2.2731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7644   -0.5501   -1.6949 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8075    0.2053   -0.4243 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2711    0.3938   -0.0898 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0324   -0.6024    0.0021 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7937    1.6583    0.1163 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9903    1.6437    0.2358 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4067    0.5528    0.0094 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3950    1.8205    1.3395 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3204    0.4855    2.8075 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6292   -0.9012    1.6626 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2475   -0.7814    2.0947 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2105    0.0331   -0.5315 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5596    2.1560    1.5903 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1410    2.2251    1.2335 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5426   -0.8969    0.9903 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0936    0.8889    0.7881 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7722   -2.1292    0.6339 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5392   -1.3711   -0.4006 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6400   -1.5348    2.6380 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7636   -3.3783    1.2955 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5207    0.5374    2.4778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2917    1.0629    1.0687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7646   -1.7887   -0.1895 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5740   -1.2648   -1.6121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7385    1.5077   -0.0732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4474    2.0092   -1.4655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6073   -0.4138   -3.0961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4490    1.7796   -3.6989 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9107   -1.6836   -1.6473 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6719   -1.5121   -3.2219 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3410   -1.5106   -1.5303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3866    0.0015   -2.4428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3590    1.2000   -0.4687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4090   -0.3864    0.4544 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2074    2.3542    0.5258 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  2  3
  6  7  1  0
  7  8  2  3
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  2  3
 13 14  1  0
 14 15  2  3
 15 16  1  0
 16 17  2  3
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  2  0
 23 25  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  0
  2 30  1  0
  3 31  1  0
  4 32  1  0
  5 33  1  0
  6 34  1  0
  7 35  1  0
  8 36  1  0
  9 37  1  0
  9 38  1  0
 10 39  1  0
 11 40  1  0
 12 41  1  0
 13 42  1  0
 14 43  1  0
 15 44  1  0
 16 45  1  0
 17 46  1  0
 18 47  1  0
 19 48  1  0
 20 49  1  0
 20 50  1  0
 21 51  1  0
 21 52  1  0
 22 53  1  0
 22 54  1  0
 25 55  1  0
M  END

HEADER    PROTEIN                                 25-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-FEB-12         0                                  
HETATM    1  C   UNK     0      -6.049  19.607   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.716  18.837   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.716  17.297   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -6.049  16.527   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      -3.382  16.527   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -3.382  14.987   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.048  14.217   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.048  12.677   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.715  11.907   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.715  10.367   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -2.048   9.597   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       0.619   9.597   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.619   8.057   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.953   7.287   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.953   5.747   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.286   4.977   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.286   3.437   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       4.620   1.127   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       5.954   3.437   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       7.287   2.667   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.621   3.437   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       9.955   2.667   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      11.288   3.437   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       9.955   1.127   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23                                                            
MASTER        0    0    0    0    0    0    0    0   25    0   48    0
END

COMPND    HMDB0257670
HETATM    1  C1  UNL     1       8.785   1.078   0.757  1.00  0.00           C  
HETATM    2  C2  UNL     1       8.179   0.130   1.764  1.00  0.00           C  
HETATM    3  C3  UNL     1       6.711  -0.044   1.398  1.00  0.00           C  
HETATM    4  O1  UNL     1       6.686  -0.572   0.107  1.00  0.00           O  
HETATM    5  C4  UNL     1       6.001   1.251   1.417  1.00  0.00           C  
HETATM    6  C5  UNL     1       4.700   1.277   1.223  1.00  0.00           C  
HETATM    7  C6  UNL     1       3.992   0.027   0.996  1.00  0.00           C  
HETATM    8  C7  UNL     1       2.693  -0.009   0.795  1.00  0.00           C  
HETATM    9  C8  UNL     1       2.025  -1.309   0.569  1.00  0.00           C  
HETATM   10  C9  UNL     1       0.991  -1.446   1.694  1.00  0.00           C  
HETATM   11  O2  UNL     1       0.268  -2.610   1.633  1.00  0.00           O  
HETATM   12  C10 UNL     1       0.213  -0.208   1.720  1.00  0.00           C  
HETATM   13  C11 UNL     1      -0.780   0.079   0.945  1.00  0.00           C  
HETATM   14  C12 UNL     1      -1.262  -0.813  -0.073  1.00  0.00           C  
HETATM   15  C13 UNL     1      -2.261  -0.515  -0.858  1.00  0.00           C  
HETATM   16  C14 UNL     1      -2.974   0.726  -0.787  1.00  0.00           C  
HETATM   17  C15 UNL     1      -4.000   1.017  -1.611  1.00  0.00           C  
HETATM   18  C16 UNL     1      -4.500   0.127  -2.651  1.00  0.00           C  
HETATM   19  O3  UNL     1      -4.944   0.922  -3.725  1.00  0.00           O  
HETATM   20  C17 UNL     1      -5.466  -0.918  -2.273  1.00  0.00           C  
HETATM   21  C18 UNL     1      -6.764  -0.550  -1.695  1.00  0.00           C  
HETATM   22  C19 UNL     1      -6.808   0.205  -0.424  1.00  0.00           C  
HETATM   23  C20 UNL     1      -8.271   0.394  -0.090  1.00  0.00           C  
HETATM   24  O4  UNL     1      -9.032  -0.602   0.002  1.00  0.00           O  
HETATM   25  O5  UNL     1      -8.794   1.658   0.116  1.00  0.00           O  
HETATM   26  H1  UNL     1       7.990   1.644   0.236  1.00  0.00           H  
HETATM   27  H2  UNL     1       9.407   0.553   0.009  1.00  0.00           H  
HETATM   28  H3  UNL     1       9.395   1.821   1.339  1.00  0.00           H  
HETATM   29  H4  UNL     1       8.320   0.486   2.807  1.00  0.00           H  
HETATM   30  H5  UNL     1       8.629  -0.901   1.663  1.00  0.00           H  
HETATM   31  H6  UNL     1       6.248  -0.781   2.095  1.00  0.00           H  
HETATM   32  H7  UNL     1       6.211   0.033  -0.531  1.00  0.00           H  
HETATM   33  H8  UNL     1       6.560   2.156   1.590  1.00  0.00           H  
HETATM   34  H9  UNL     1       4.141   2.225   1.234  1.00  0.00           H  
HETATM   35  H10 UNL     1       4.543  -0.897   0.990  1.00  0.00           H  
HETATM   36  H11 UNL     1       2.094   0.889   0.788  1.00  0.00           H  
HETATM   37  H12 UNL     1       2.772  -2.129   0.634  1.00  0.00           H  
HETATM   38  H13 UNL     1       1.539  -1.371  -0.401  1.00  0.00           H  
HETATM   39  H14 UNL     1       1.640  -1.535   2.638  1.00  0.00           H  
HETATM   40  H15 UNL     1       0.764  -3.378   1.296  1.00  0.00           H  
HETATM   41  H16 UNL     1       0.521   0.537   2.478  1.00  0.00           H  
HETATM   42  H17 UNL     1      -1.292   1.063   1.069  1.00  0.00           H  
HETATM   43  H18 UNL     1      -0.765  -1.789  -0.190  1.00  0.00           H  
HETATM   44  H19 UNL     1      -2.574  -1.265  -1.612  1.00  0.00           H  
HETATM   45  H20 UNL     1      -2.739   1.508  -0.073  1.00  0.00           H  
HETATM   46  H21 UNL     1      -4.447   2.009  -1.465  1.00  0.00           H  
HETATM   47  H22 UNL     1      -3.607  -0.414  -3.096  1.00  0.00           H  
HETATM   48  H23 UNL     1      -4.449   1.780  -3.699  1.00  0.00           H  
HETATM   49  H24 UNL     1      -4.911  -1.684  -1.647  1.00  0.00           H  
HETATM   50  H25 UNL     1      -5.672  -1.512  -3.222  1.00  0.00           H  
HETATM   51  H26 UNL     1      -7.341  -1.511  -1.530  1.00  0.00           H  
HETATM   52  H27 UNL     1      -7.387   0.002  -2.443  1.00  0.00           H  
HETATM   53  H28 UNL     1      -6.359   1.200  -0.469  1.00  0.00           H  
HETATM   54  H29 UNL     1      -6.409  -0.386   0.454  1.00  0.00           H  
HETATM   55  H30 UNL     1      -8.207   2.354   0.526  1.00  0.00           H  
CONECT    1    2   26   27   28
CONECT    2    3   29   30
CONECT    3    4    5   31
CONECT    4   32
CONECT    5    6    6   33
CONECT    6    7   34
CONECT    7    8    8   35
CONECT    8    9   36
CONECT    9   10   37   38
CONECT   10   11   12   39
CONECT   11   40
CONECT   12   13   13   41
CONECT   13   14   42
CONECT   14   15   15   43
CONECT   15   16   44
CONECT   16   17   17   45
CONECT   17   18   46
CONECT   18   19   20   47
CONECT   19   48
CONECT   20   21   49   50
CONECT   21   22   51   52
CONECT   22   23   53   54
CONECT   23   24   24   25
CONECT   25   55
END

HMDB0257670
     RDKit          3D
(5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid
 55 54  0  0  0  0  0  0  0  0999 V2000
    8.7851    1.0780    0.7572 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1792    0.1305    1.7640 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7106   -0.0436    1.3984 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6857   -0.5719    0.1067 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0013    1.2510    1.4169 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6999    1.2773    1.2231 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9923    0.0267    0.9960 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6935   -0.0086    0.7948 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0249   -1.3085    0.5689 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9905   -1.4462    1.6937 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2682   -2.6099    1.6331 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2126   -0.2081    1.7196 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7805    0.0791    0.9454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2624   -0.8132   -0.0726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2614   -0.5153   -0.8581 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9738    0.7259   -0.7870 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9997    1.0166   -1.6113 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5002    0.1265   -2.6506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9443    0.9219   -3.7248 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4664   -0.9184   -2.2731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7644   -0.5501   -1.6949 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8075    0.2053   -0.4243 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2711    0.3938   -0.0898 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0324   -0.6024    0.0021 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7937    1.6583    0.1163 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9903    1.6437    0.2358 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4067    0.5528    0.0094 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3950    1.8205    1.3395 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3204    0.4855    2.8075 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6292   -0.9012    1.6626 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2475   -0.7814    2.0947 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2105    0.0331   -0.5315 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5596    2.1560    1.5903 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1410    2.2251    1.2335 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5426   -0.8969    0.9903 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0936    0.8889    0.7881 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7722   -2.1292    0.6339 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5392   -1.3711   -0.4006 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6400   -1.5348    2.6380 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7636   -3.3783    1.2955 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5207    0.5374    2.4778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2917    1.0629    1.0687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7646   -1.7887   -0.1895 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5740   -1.2648   -1.6121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7385    1.5077   -0.0732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4474    2.0092   -1.4655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6073   -0.4138   -3.0961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4490    1.7796   -3.6989 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9107   -1.6836   -1.6473 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6719   -1.5121   -3.2219 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3410   -1.5106   -1.5303 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3866    0.0015   -2.4428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3590    1.2000   -0.4687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4090   -0.3864    0.4544 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2074    2.3542    0.5258 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  2  3
  6  7  1  0
  7  8  2  3
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  2  3
 13 14  1  0
 14 15  2  3
 15 16  1  0
 16 17  2  3
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  2  0
 23 25  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  0
  2 30  1  0
  3 31  1  0
  4 32  1  0
  5 33  1  0
  6 34  1  0
  7 35  1  0
  8 36  1  0
  9 37  1  0
  9 38  1  0
 10 39  1  0
 11 40  1  0
 12 41  1  0
 13 42  1  0
 14 43  1  0
 15 44  1  0
 16 45  1  0
 17 46  1  0
 18 47  1  0
 19 48  1  0
 20 49  1  0
 20 50  1  0
 21 51  1  0
 21 52  1  0
 22 53  1  0
 22 54  1  0
 25 55  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₂₀H₃₀O₅

Average Molecular Weight

350.4492

Monoisotopic Molecular Weight

350.20932407

IUPAC Name

5,12,18-trihydroxyicosa-6,8,10,14,16-pentaenoic acid

Traditional Name

5,12,18-trihydroxyicosa-6,8,10,14,16-pentaenoic acid

CAS Registry Number

Not Available

SMILES

CCC(O)C=CC=CCC(O)C=CC=CC=CC(O)CCCC(O)=O

InChI Identifier

InChI=1S/C20H30O5/c1-2-17(21)11-8-5-9-14-18(22)12-6-3-4-7-13-19(23)15-10-16-20(24)25/h3-9,11-13,17-19,21-23H,2,10,14-16H2,1H3,(H,24,25)

InChI Key

AOPOCGPBAIARAV-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydroxyeicosapentaenoic acids. These are eicosanoic acids with an attached hydroxyl group and five CC double bonds.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Hydroxyeicosapentaenoic acids

Alternative Parents

Substituents

Hydroxyeicosapentaenoic acid
Long-chain fatty acid
Hydroxy fatty acid
Fatty acid
Unsaturated fatty acid
Secondary alcohol
Carboxylic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Polyol
Organic oxide
Organic oxygen compound
Hydrocarbon derivative
Carbonyl group
Organooxygen compound
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	4.24	ALOGPS
logP	2.53	ChemAxon
logS	-3.9	ALOGPS
pKa (Strongest Acidic)	4.65	ChemAxon
pKa (Strongest Basic)	-1.1	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	97.99 Å²	ChemAxon
Rotatable Bond Count	13	ChemAxon
Refractivity	105.62 m³·mol⁻¹	ChemAxon
Polarizability	41.82 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	182.594	30932474
DeepCCS	[M-H]-	180.236	30932474
DeepCCS	[M-2H]-	213.123	30932474
DeepCCS	[M+Na]+	188.687	30932474

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter)). Predicted by Afia on May 17, 2022.	3.97 minutes	32390414
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter)). Predicted by Afia on May 17, 2022.	5.04 minutes	32390414
Predicted by Siyang on May 30, 2022	14.6405 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	1.81 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	2624.6 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	243.2 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	156.4 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	184.7 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	169.6 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	572.4 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	387.4 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	128.6 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1316.1 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	517.2 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1253.2 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	416.8 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	398.6 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	337.4 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	211.6 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.4 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid	CCC(O)C=CC=CCC(O)C=CC=CC=CC(O)CCCC(O)=O	5258.9	Standard polar	33892256
(5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid	CCC(O)C=CC=CCC(O)C=CC=CC=CC(O)CCCC(O)=O	2822.0	Standard non polar	33892256
(5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid	CCC(O)C=CC=CCC(O)C=CC=CC=CC(O)CCCC(O)=O	3021.9	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (Non-derivatized) - 70eV, Positive	splash10-001i-5379000000-0d3673588a0031b08acc	2021-09-24	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_1_4) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_2_2) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_2_3) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_2_4) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_2_5) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_2_6) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_3_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_3_2) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_3_3) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_3_4) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TMS_4_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TBDMS_1_2) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TBDMS_1_3) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TBDMS_1_4) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TBDMS_2_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TBDMS_2_2) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TBDMS_2_3) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid GC-MS (TBDMS_2_4) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB027561

KNApSAcK ID

Not Available

Chemspider ID

21236203

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

72781525

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for (5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid (HMDB0257670)

MOL for HMDB0257670 ((5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid)

3D MOL for HMDB0257670 ((5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid)

3D SDF for HMDB0257670 ((5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid)

3D-SDF for HMDB0257670 ((5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid)

PDB for HMDB0257670 ((5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid)

3D PDB for HMDB0257670 ((5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid)

SMILES for HMDB0257670 ((5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid)

INCHI for HMDB0257670 ((5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid)

Structure for HMDB0257670 ((5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid)

3D Structure for HMDB0257670 ((5S,12R,18R)-5,12,18-Trihydroxyicosa-6,8,10,14,16-pentaenoic acid)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra