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Identification Taxonomy Ontology Physical properties Spectra Biological properties Concentrations Links References XML

Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-10 23:45:42 UTC

Update Date

2021-09-26 22:56:01 UTC

HMDB ID

HMDB0246746

Secondary Accession Numbers

None

Metabolite Identification

Common Name

Glutaramic acid

Description

Glutaramic acid, also known as glutaramate, belongs to the class of organic compounds known as straight chain fatty acids. These are fatty acids with a straight aliphatic chain. Based on a literature review a significant number of articles have been published on Glutaramic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). Glutaramic acid is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Glutaramic acid is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

View in JSmol View NMR Assignments View Stereo Labels

Synonyms

Value	Source
4-(Aminocarbonyl)butanoic acid	ChEBI
4-Carbamoylbutanoic acid	ChEBI
4-Carbamoylbutyric acid	ChEBI
4-Carboxybutyramide	ChEBI
Glutaric acid monoamide	ChEBI
4-(Aminocarbonyl)butanoate	Generator
4-Carbamoylbutanoate	Generator
4-Carbamoylbutyrate	Generator
Glutarate monoamide	Generator
Glutaramate	Generator

Chemical Formula

C₅H₉NO₃

Average Molecular Weight

131.131

Monoisotopic Molecular Weight

131.058243154

IUPAC Name

4-carbamoylbutanoic acid

Traditional Name

glutaramic acid

CAS Registry Number

Not Available

SMILES

NC(=O)CCCC(O)=O

InChI Identifier

InChI=1S/C5H9NO3/c6-4(7)2-1-3-5(8)9/h1-3H2,(H2,6,7)(H,8,9)

InChI Key

GTFMAONWNTUZEW-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as straight chain fatty acids. These are fatty acids with a straight aliphatic chain.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Straight chain fatty acids

Alternative Parents

Substituents

Fatty amide
Straight chain fatty acid
Carboxamide group
Primary carboxylic acid amide
Carboxylic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Carbonyl group
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

dicarboxylic acid monoamide (CHEBI:24326 )

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	-1.4	ALOGPS
logP	-0.76	ChemAxon
logS	-0.13	ALOGPS
pKa (Strongest Acidic)	4.36	ChemAxon
pKa (Strongest Basic)	-1.5	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	80.39 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	29.96 m³·mol⁻¹	ChemAxon
Polarizability	12.56 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	129.354	30932474
DeepCCS	[M-H]-	126.469	30932474
DeepCCS	[M-2H]-	162.875	30932474
DeepCCS	[M+Na]+	137.918	30932474
AllCCS	[M+H]+	130.1	32859911
AllCCS	[M+H-H2O]+	126.0	32859911
AllCCS	[M+NH4]+	134.0	32859911
AllCCS	[M+Na]+	135.1	32859911
AllCCS	[M-H]-	126.5	32859911
AllCCS	[M+Na-2H]-	129.2	32859911
AllCCS	[M+HCOO]-	132.1	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Predicted by Siyang on May 30, 2022	8.7158 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	4.38 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	772.0 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	300.2 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	74.6 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	180.9 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	70.6 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	246.5 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	250.9 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	610.5 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	590.1 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	72.6 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	736.6 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	189.0 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	188.2 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	637.9 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	388.7 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	333.6 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Glutaramic acid	NC(=O)CCCC(O)=O	1986.1	Standard polar	33892256
Glutaramic acid	NC(=O)CCCC(O)=O	1354.4	Standard non polar	33892256
Glutaramic acid	NC(=O)CCCC(O)=O	1484.2	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Glutaramic acid,2TMS,isomer #1	C[Si](C)(C)NC(=O)CCCC(=O)O[Si](C)(C)C	1541.3	Semi standard non polar	33892256
Glutaramic acid,2TMS,isomer #1	C[Si](C)(C)NC(=O)CCCC(=O)O[Si](C)(C)C	1550.3	Standard non polar	33892256
Glutaramic acid,2TMS,isomer #1	C[Si](C)(C)NC(=O)CCCC(=O)O[Si](C)(C)C	1817.2	Standard polar	33892256
Glutaramic acid,2TMS,isomer #2	C[Si](C)(C)N(C(=O)CCCC(=O)O)[Si](C)(C)C	1654.1	Semi standard non polar	33892256
Glutaramic acid,2TMS,isomer #2	C[Si](C)(C)N(C(=O)CCCC(=O)O)[Si](C)(C)C	1640.9	Standard non polar	33892256
Glutaramic acid,2TMS,isomer #2	C[Si](C)(C)N(C(=O)CCCC(=O)O)[Si](C)(C)C	2003.8	Standard polar	33892256
Glutaramic acid,3TMS,isomer #1	C[Si](C)(C)OC(=O)CCCC(=O)N([Si](C)(C)C)[Si](C)(C)C	1655.9	Semi standard non polar	33892256
Glutaramic acid,3TMS,isomer #1	C[Si](C)(C)OC(=O)CCCC(=O)N([Si](C)(C)C)[Si](C)(C)C	1632.2	Standard non polar	33892256
Glutaramic acid,3TMS,isomer #1	C[Si](C)(C)OC(=O)CCCC(=O)N([Si](C)(C)C)[Si](C)(C)C	1689.7	Standard polar	33892256
Glutaramic acid,2TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC(=O)CCCC(=O)O[Si](C)(C)C(C)(C)C	1991.7	Semi standard non polar	33892256
Glutaramic acid,2TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC(=O)CCCC(=O)O[Si](C)(C)C(C)(C)C	1947.0	Standard non polar	33892256
Glutaramic acid,2TBDMS,isomer #1	CC(C)(C)[Si](C)(C)NC(=O)CCCC(=O)O[Si](C)(C)C(C)(C)C	1996.4	Standard polar	33892256
Glutaramic acid,2TBDMS,isomer #2	CC(C)(C)[Si](C)(C)N(C(=O)CCCC(=O)O)[Si](C)(C)C(C)(C)C	2078.0	Semi standard non polar	33892256
Glutaramic acid,2TBDMS,isomer #2	CC(C)(C)[Si](C)(C)N(C(=O)CCCC(=O)O)[Si](C)(C)C(C)(C)C	2021.5	Standard non polar	33892256
Glutaramic acid,2TBDMS,isomer #2	CC(C)(C)[Si](C)(C)N(C(=O)CCCC(=O)O)[Si](C)(C)C(C)(C)C	2073.6	Standard polar	33892256
Glutaramic acid,3TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC(=O)CCCC(=O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2317.5	Semi standard non polar	33892256
Glutaramic acid,3TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC(=O)CCCC(=O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2245.4	Standard non polar	33892256
Glutaramic acid,3TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC(=O)CCCC(=O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C	2050.7	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Glutaramic acid GC-MS (Non-derivatized) - 70eV, Positive	splash10-000l-9100000000-4d055f485cf4dc2c6c25	2021-09-23	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Glutaramic acid GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Glutaramic acid GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Glutaramic acid GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Glutaramic acid GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Glutaramic acid GC-MS (TBDMS_1_2) - 70eV, Positive	Not Available	2021-11-03	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Glutaramic acid 10V, Positive-QTOF	splash10-03ys-6900000000-31c8c5480b412a9b1df0	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Glutaramic acid 20V, Positive-QTOF	splash10-00re-9000000000-a45055ab73703edeba73	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Glutaramic acid 40V, Positive-QTOF	splash10-0006-9000000000-09d96acbfcd9ce477243	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Glutaramic acid 10V, Negative-QTOF	splash10-03e9-3900000000-b38797e751b2d594c7bc	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Glutaramic acid 20V, Negative-QTOF	splash10-06r6-9200000000-56c020e972ff9ba4ae98	2021-10-12	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Glutaramic acid 40V, Negative-QTOF	splash10-0006-9000000000-72218a91708aed3270cd	2021-10-12	Wishart Lab	View Spectrum

NMR Spectra

Spectrum Type	Description	Deposition Date	Source	View
Predicted 1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-10-13	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

147266

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

168356

PDB ID

Not Available

ChEBI ID

24326

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for Glutaramic acid (HMDB0246746)

MOL for HMDB0246746 (Glutaramic acid)

3D MOL for HMDB0246746 (Glutaramic acid)

3D SDF for HMDB0246746 (Glutaramic acid)

3D-SDF for HMDB0246746 (Glutaramic acid)

PDB for HMDB0246746 (Glutaramic acid)

3D PDB for HMDB0246746 (Glutaramic acid)

SMILES for HMDB0246746 (Glutaramic acid)

INCHI for HMDB0246746 (Glutaramic acid)

Structure for HMDB0246746 (Glutaramic acid)

3D Structure for HMDB0246746 (Glutaramic acid)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra

NMR Spectra