Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2019-10-11 15:49:19 UTC
Update Date2022-03-07 03:18:18 UTC
HMDB IDHMDB0240537
Secondary Accession NumbersNone
Metabolite Identification
Common NameIsorhamnetin 3-sulfate
DescriptionIsorhamnetin 3-sulfate belongs to the class of organic compounds known as 3'-o-methylated flavonoids. These are flavonoids with methoxy groups attached to the C3' atom of the flavonoid backbone. Based on a literature review very few articles have been published on Isorhamnetin 3-sulfate.
Structure
Thumb
Synonyms
ValueSource
Isorhamnetin 3-sulfuric acidGenerator
Isorhamnetin 3-sulphateGenerator
Isorhamnetin 3-sulphuric acidGenerator
Chemical FormulaC16H10O10S
Average Molecular Weight394.31
Monoisotopic Molecular Weight394.000564856
IUPAC Name5-hydroxy-2-(3-methoxy-4-oxidophenyl)-4-oxo-3-(sulfooxy)-4H-chromen-7-olate
Traditional Name5-hydroxy-2-(3-methoxy-4-oxidophenyl)-4-oxo-3-(sulfooxy)chromen-7-olate
CAS Registry NumberNot Available
SMILES
COC1=C([O-])C=CC(=C1)C1=C(OS(O)(=O)=O)C(=O)C2=C(O)C=C([O-])C=C2O1
InChI Identifier
InChI=1S/C16H12O10S/c1-24-11-4-7(2-3-9(11)18)15-16(26-27(21,22)23)14(20)13-10(19)5-8(17)6-12(13)25-15/h2-6,17-19H,1H3,(H,21,22,23)/p-2
InChI KeyCZFNXFXZXWDYMZ-UHFFFAOYSA-L
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 3'-o-methylated flavonoids. These are flavonoids with methoxy groups attached to the C3' atom of the flavonoid backbone.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassFlavonoids
Sub ClassO-methylated flavonoids
Direct Parent3'-O-methylated flavonoids
Alternative Parents
Substituents
  • 3p-methoxyflavonoid-skeleton
  • Hydroxyflavonoid
  • Flavone
  • 5-hydroxyflavonoid
  • 7-hydroxyflavonoid
  • Chromone
  • 1-benzopyran
  • Arylsulfate
  • Benzopyran
  • Phenoxy compound
  • Phenol ether
  • Anisole
  • Methoxybenzene
  • 1-hydroxy-4-unsubstituted benzenoid
  • Phenoxide
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Phenol
  • Pyranone
  • Monocyclic benzene moiety
  • Benzenoid
  • Sulfuric acid ester
  • Sulfate-ester
  • Sulfuric acid monoester
  • Pyran
  • Vinylogous acid
  • Organic sulfuric acid or derivatives
  • Heteroaromatic compound
  • Ether
  • Organoheterocyclic compound
  • Oxacycle
  • Organic oxide
  • Organic oxygen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic anion
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP0.65ALOGPS
logP1.83ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)-2.4ChemAxon
pKa (Strongest Basic)-4.8ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count9ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area165.48 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity112.44 m³·mol⁻¹ChemAxon
Polarizability34.55 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+187.59230932474
DeepCCS[M-H]-185.19630932474
DeepCCS[M-2H]-218.07930932474
DeepCCS[M+Na]+193.50530932474

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.5.83 minutes32390414
Predicted by Siyang on May 30, 202215.7604 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20225.51 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2344.0 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid397.4 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid161.5 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid226.5 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid140.2 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid586.1 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid735.1 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)75.4 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1226.5 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid443.9 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1746.7 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid338.8 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid416.6 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate412.3 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA177.7 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water68.4 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Isorhamnetin 3-sulfateCOC1=C([O-])C=CC(=C1)C1=C(OS(O)(=O)=O)C(=O)C2=C(O)C=C([O-])C=C2O15549.0Standard polar33892256
Isorhamnetin 3-sulfateCOC1=C([O-])C=CC(=C1)C1=C(OS(O)(=O)=O)C(=O)C2=C(O)C=C([O-])C=C2O13181.8Standard non polar33892256
Isorhamnetin 3-sulfateCOC1=C([O-])C=CC(=C1)C1=C(OS(O)(=O)=O)C(=O)C2=C(O)C=C([O-])C=C2O13691.6Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Isorhamnetin 3-sulfate,1TMS,isomer #1COC1=CC(C2=C(OS(=O)(=O)O)C(=O)C3=C(O[Si](C)(C)C)C=C([O-])C=C3O2)=CC=C1[O-]3362.8Semi standard non polar33892256
Isorhamnetin 3-sulfate,1TMS,isomer #2COC1=CC(C2=C(OS(=O)(=O)O[Si](C)(C)C)C(=O)C3=C(O)C=C([O-])C=C3O2)=CC=C1[O-]3411.1Semi standard non polar33892256
Isorhamnetin 3-sulfate,2TMS,isomer #1COC1=CC(C2=C(OS(=O)(=O)O[Si](C)(C)C)C(=O)C3=C(O[Si](C)(C)C)C=C([O-])C=C3O2)=CC=C1[O-]3387.1Semi standard non polar33892256
Isorhamnetin 3-sulfate,2TMS,isomer #1COC1=CC(C2=C(OS(=O)(=O)O[Si](C)(C)C)C(=O)C3=C(O[Si](C)(C)C)C=C([O-])C=C3O2)=CC=C1[O-]3542.8Standard non polar33892256
Isorhamnetin 3-sulfate,2TMS,isomer #1COC1=CC(C2=C(OS(=O)(=O)O[Si](C)(C)C)C(=O)C3=C(O[Si](C)(C)C)C=C([O-])C=C3O2)=CC=C1[O-]4336.5Standard polar33892256
Isorhamnetin 3-sulfate,1TBDMS,isomer #1COC1=CC(C2=C(OS(=O)(=O)O)C(=O)C3=C(O[Si](C)(C)C(C)(C)C)C=C([O-])C=C3O2)=CC=C1[O-]3626.8Semi standard non polar33892256
Isorhamnetin 3-sulfate,1TBDMS,isomer #2COC1=CC(C2=C(OS(=O)(=O)O[Si](C)(C)C(C)(C)C)C(=O)C3=C(O)C=C([O-])C=C3O2)=CC=C1[O-]3680.4Semi standard non polar33892256
Isorhamnetin 3-sulfate,2TBDMS,isomer #1COC1=CC(C2=C(OS(=O)(=O)O[Si](C)(C)C(C)(C)C)C(=O)C3=C(O[Si](C)(C)C(C)(C)C)C=C([O-])C=C3O2)=CC=C1[O-]3896.6Semi standard non polar33892256
Isorhamnetin 3-sulfate,2TBDMS,isomer #1COC1=CC(C2=C(OS(=O)(=O)O[Si](C)(C)C(C)(C)C)C(=O)C3=C(O[Si](C)(C)C(C)(C)C)C=C([O-])C=C3O2)=CC=C1[O-]4117.7Standard non polar33892256
Isorhamnetin 3-sulfate,2TBDMS,isomer #1COC1=CC(C2=C(OS(=O)(=O)O[Si](C)(C)C(C)(C)C)C(=O)C3=C(O[Si](C)(C)C(C)(C)C)C=C([O-])C=C3O2)=CC=C1[O-]4314.7Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isorhamnetin 3-sulfate 10V, Negative-QTOFsplash10-0002-0009000000-96fd3abed02c84b2ab992021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isorhamnetin 3-sulfate 20V, Negative-QTOFsplash10-0002-0309000000-3a9e57c37b2ea4e5887e2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isorhamnetin 3-sulfate 40V, Negative-QTOFsplash10-0htl-1913000000-d239219f20a745e73c3f2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isorhamnetin 3-sulfate 10V, Positive-QTOFsplash10-0002-0009000000-abf928aa266203c54ada2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isorhamnetin 3-sulfate 20V, Positive-QTOFsplash10-0002-0009000000-77006a160ecff3a8a99c2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isorhamnetin 3-sulfate 40V, Positive-QTOFsplash10-0udj-1914000000-776503d2e3a8766dc6782021-09-24Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedAdult (>18 years old)BothNormal details
UrineDetected but not QuantifiedNot QuantifiedAdult (>18 years old)BothNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB093730
KNApSAcK IDNot Available
Chemspider ID24808222
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound44123491
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available