Hmdb loader

Showing metabocard for PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) (HMDB0116460)

Jump To Section:
IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesXML
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2017-09-09 08:12:45 UTC
Update Date2022-11-30 19:26:37 UTC
HMDB IDHMDB0116460
Secondary Accession NumbersNone
Metabolite Identification
Common NamePGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z))
DescriptionPGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) is a phosphatidylglycerophosphate (PGP). It is a glycerophospholipid in which a phosphoglycerol moiety occupies a glycerol substitution site followed by another phosphate moiety. Phosphatidylglycerolphosphate is present at a level of 1-2% in most animal tissues, but it can be the second most abundant phospholipid in lung surfactant (up to 11% of the total). It is well established that the concentration of phosphatidylglycerolphosphate increases during fetal development. Phosphatidylglycerolphosphate may be present in animal tissues merely as a precursor for cardiolipin synthesis. As is the case with diacylglycerols, phosphatidylglycerophosphates can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)), in particular, consists of one chain of arachidonic acid at the C-1 position and one chain of eicosenoic acid at the C-2 position. They are synthesized by the addition of glycerol 3-phosphate to a CDP-diacylglycerol. In turn, PGPs are dephosphorylated to phosphatidylglycerols (PGs). While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes.
Structure
Data?1563873719
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0116460 (PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)))

PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z))
  Mrv1652309171703182D          

 63 62  0  0  1  0            999 V2000
    2.7849    0.9634    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3818    0.3608    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0919    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8021    0.3608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9713   -0.3494    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7924   -0.3494    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6715    0.7708    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9613    0.3608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7968    0.3437    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5071   -0.0665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2174    0.3437    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9275   -0.0665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0493    0.6481    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3125    0.0209    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0493    1.3958    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8811    0.9262    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6378    0.3434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4300    0.5557    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    4.4300    1.3758    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2223    0.3434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0199   -0.1546    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5122    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5122    1.5410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2263    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9404    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6545    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3686    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1936    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9078    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6219    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4469    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1610    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8751    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7001    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.4142    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.1283    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.9533    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.6674    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.3816    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.0957    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.8098    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -18.5240    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5361   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5361   -1.5406    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2503   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9644   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6785   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3926   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1067   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8208   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5350   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2491   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9632   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6773   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5023   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2165   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9306   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.6447   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.3588   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.0730   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.7871   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.5012   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.2153   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  3  1  0  0  0  0
  2  6  1  0  0  0  0
  2  5  1  1  0  0  0
  3  4  1  0  0  0  0
  4 22  1  0  0  0  0
  7  2  1  0  0  0  0
  8  7  1  0  0  0  0
 10  9  1  0  0  0  0
 11 10  1  0  0  0  0
 11 16  1  0  0  0  0
 11  1  1  6  0  0  0
 12 11  1  0  0  0  0
 12 17  1  0  0  0  0
 13  9  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  2  0  0  0  0
 13  8  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 18 21  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 43  6  1  0  0  0  0
 43 44  2  0  0  0  0
 43 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  2  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
 60 61  1  0  0  0  0
 61 62  1  0  0  0  0
 62 63  1  0  0  0  0
M  END
Download

3D MOL for HMDB0116460 (PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)))

HMDB0116460
     RDKit          3D
PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z))
143142  0  0  0  0  0  0  0  0999 V2000
    2.5994   -4.4948   -1.7859 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6520   -5.6404   -1.8216 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2096   -5.2254   -2.2103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2924   -4.2292   -1.2419 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7549   -3.8812   -1.4642 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4803   -5.1627   -1.2359 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2736   -5.2526   -0.1510 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4341   -4.1531    0.7851 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8377   -3.8355    1.1444 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4847   -2.8048    0.8295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9282   -1.6839   -0.0650 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0590   -1.4499   -1.0464 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5411   -0.2194   -1.2521 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8884    0.8985   -0.5050 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7988    2.0944   -1.4278 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8025    3.2839   -0.9136 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8507    3.4580    0.5933 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5855    4.2612    0.9053 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1749    4.2608    2.3482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6795    2.8908    2.7022 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7181    2.0706    1.7528 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1992    2.5073    3.9166 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7399    1.0454    3.8575 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4164    1.0350    3.0632 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4582   -0.0097    1.9706 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1349   -0.1109    1.5593 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4150    0.2567    0.1173 P   0  0  0  0  0  5  0  0  0  0  0  0
    1.3335    1.6101    0.3349 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6861   -0.7630   -0.4277 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5010    0.7057   -1.1656 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8082    0.7385   -1.1671 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2591    1.3233   -2.5155 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7367    2.6344   -2.5585 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7903    0.5466   -3.6942 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4094    0.4496   -3.7736 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0257   -0.4100   -5.1658 P   0  0  0  0  0  5  0  0  0  0  0  0
   -0.8449   -1.6173   -5.2783 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2422    0.5691   -6.5139 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6483   -0.8675   -5.0039 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2727    0.8696    3.8118 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1142    0.6888    5.0598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8353    0.3977    5.9536 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4451    0.7577    5.7000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7354    0.6886    5.1151 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1145   -0.5336    4.2794 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6437   -0.5852    4.2217 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2554   -1.6412    3.4389 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3351   -1.5239    1.9451 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2826   -0.3851    1.5805 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4644   -0.3118    0.0860 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1979    0.0072   -0.6397 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3643    0.0482   -2.0949 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1837    1.0422   -2.8817 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7638    2.4020   -2.4477 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3865    2.6307   -2.9463 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8253    3.9867   -2.8314 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9663    4.7957   -1.6417 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5355    4.3119   -0.2872 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7844    5.4366    0.7230 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6495    4.9555    2.1168 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7554    3.9579    2.4718 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9188   -4.3594   -0.7138 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1617   -3.5472   -2.1647 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5230   -4.7244   -2.3791 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8982   -6.4138   -2.5942 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5886   -6.1862   -0.8487 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4606   -6.0672   -2.3329 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2670   -4.7077   -3.2305 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2303   -4.6360   -0.1797 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2682   -3.2589   -1.3154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0603   -2.9944   -1.0027 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8584   -3.7041   -2.5933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3586   -5.9601   -1.9133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8227   -6.2211   -0.0225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8901   -3.2465    0.5569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9483   -4.5377    1.8039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3528   -4.6306    1.7798 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5153   -2.5960    1.1868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7306   -0.8337    0.5711 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0387   -2.0171   -0.6097 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4278   -2.3018   -1.5672 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3554   -0.0278   -1.9139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5711    1.1401    0.3228 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8585    0.6231   -0.2608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7853    1.8943   -2.4886 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7618    4.1469   -1.5803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7405    4.1773    0.7190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9994    2.5516    1.1063 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8548    5.2965    0.5516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7918    3.9219    0.2333 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9967    4.5489    3.0229 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3541    5.0258    2.4637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5427    0.5632    3.2809 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6856    0.8235    4.8792 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5311    2.1170    2.7517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2091    0.0454    1.2647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6661   -0.9891    2.5519 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5051   -0.5875    0.1472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3177   -0.2737   -1.1023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3119    1.4418   -0.4595 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3406    1.3890   -2.5271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7313    2.6039   -2.5195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1263    1.1020   -4.6286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3049   -0.4483   -3.7310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8900    0.1374   -7.1423 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1678   -0.6215   -5.8005 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3790    1.8681    6.1613 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4532    0.2068    6.7015 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5608    0.7718    5.9002 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9670    1.5696    4.4407 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7331   -0.3640    3.2539 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7268   -1.4790    4.7316 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9837    0.4444    3.9698 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9572   -0.6875    5.3111 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2894   -1.8649    3.8415 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6754   -2.6014    3.6820 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3682   -1.3282    1.4930 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7641   -2.4282    1.4874 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2476   -0.5859    2.0506 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8549    0.5967    1.8901 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8551   -1.3316   -0.2436 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2827    0.4106   -0.1518 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5428   -0.9185   -0.4793 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6556    0.8606   -0.1821 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7253   -0.9251   -2.5541 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3614    0.9356   -3.9994 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9200    2.5872   -1.3670 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4254    3.0997   -2.9723 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4068    2.3722   -4.0612 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6850    1.8207   -2.5718 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7565    3.9838   -3.2296 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3950    4.5730   -3.6483 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9866    5.3063   -1.5571 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3010    5.7380   -1.8179 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0876    3.4259    0.0044 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4221    4.1612   -0.2530 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7071    5.9818    0.4773 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9278    6.1647    0.5527 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6928    4.3669    2.2721 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6449    5.7662    2.8686 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7152    3.8042    3.5581 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6410    2.9884    1.9826 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7651    4.4047    2.2694 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  2  0
 27 29  1  0
 27 30  1  0
 30 31  1  0
 31 32  1  0
 32 33  1  0
 32 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  2  0
 36 38  1  0
 36 39  1  0
 24 40  1  0
 40 41  1  0
 41 42  2  0
 41 43  1  0
 43 44  1  0
 44 45  1  0
 45 46  1  0
 46 47  1  0
 47 48  1  0
 48 49  1  0
 49 50  1  0
 50 51  1  0
 51 52  1  0
 52 53  2  0
 53 54  1  0
 54 55  1  0
 55 56  1  0
 56 57  1  0
 57 58  1  0
 58 59  1  0
 59 60  1  0
 60 61  1  0
  1 62  1  0
  1 63  1  0
  1 64  1  0
  2 65  1  0
  2 66  1  0
  3 67  1  0
  3 68  1  0
  4 69  1  0
  4 70  1  0
  5 71  1  0
  5 72  1  0
  6 73  1  0
  7 74  1  0
  8 75  1  0
  8 76  1  0
  9 77  1  0
 10 78  1  0
 11 79  1  0
 11 80  1  0
 12 81  1  0
 13 82  1  0
 14 83  1  0
 14 84  1  0
 15 85  1  0
 16 86  1  0
 17 87  1  0
 17 88  1  0
 18 89  1  0
 18 90  1  0
 19 91  1  0
 19 92  1  0
 23 93  1  0
 23 94  1  0
 24 95  1  6
 25 96  1  0
 25 97  1  0
 29 98  1  0
 31 99  1  0
 31100  1  0
 32101  1  1
 33102  1  0
 34103  1  0
 34104  1  0
 38105  1  0
 39106  1  0
 43107  1  0
 43108  1  0
 44109  1  0
 44110  1  0
 45111  1  0
 45112  1  0
 46113  1  0
 46114  1  0
 47115  1  0
 47116  1  0
 48117  1  0
 48118  1  0
 49119  1  0
 49120  1  0
 50121  1  0
 50122  1  0
 51123  1  0
 51124  1  0
 52125  1  0
 53126  1  0
 54127  1  0
 54128  1  0
 55129  1  0
 55130  1  0
 56131  1  0
 56132  1  0
 57133  1  0
 57134  1  0
 58135  1  0
 58136  1  0
 59137  1  0
 59138  1  0
 60139  1  0
 60140  1  0
 61141  1  0
 61142  1  0
 61143  1  0
M  END
Download

3D SDF for HMDB0116460 (PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)))

PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z))
  Mrv1652309171703182D          

 63 62  0  0  1  0            999 V2000
    2.7849    0.9634    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3818    0.3608    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0919    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8021    0.3608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9713   -0.3494    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7924   -0.3494    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6715    0.7708    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9613    0.3608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7968    0.3437    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5071   -0.0665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2174    0.3437    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9275   -0.0665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0493    0.6481    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3125    0.0209    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0493    1.3958    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8811    0.9262    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6378    0.3434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4300    0.5557    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    4.4300    1.3758    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2223    0.3434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0199   -0.1546    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5122    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5122    1.5410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2263    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9404    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6545    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3686    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1936    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9078    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6219    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4469    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1610    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8751    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7001    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.4142    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.1283    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.9533    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.6674    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.3816    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.0957    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.8098    0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -18.5240    0.3564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5361   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5361   -1.5406    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2503   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9644   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6785   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3926   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1067   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8208   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5350   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2491   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9632   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6773   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5023   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2165   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9306   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.6447   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.3588   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.0730   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.7871   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.5012   -0.3560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.2153   -0.7691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  3  1  0  0  0  0
  2  6  1  0  0  0  0
  2  5  1  1  0  0  0
  3  4  1  0  0  0  0
  4 22  1  0  0  0  0
  7  2  1  0  0  0  0
  8  7  1  0  0  0  0
 10  9  1  0  0  0  0
 11 10  1  0  0  0  0
 11 16  1  0  0  0  0
 11  1  1  6  0  0  0
 12 11  1  0  0  0  0
 12 17  1  0  0  0  0
 13  9  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  2  0  0  0  0
 13  8  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 18 21  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 43  6  1  0  0  0  0
 43 44  2  0  0  0  0
 43 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  2  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
 60 61  1  0  0  0  0
 61 62  1  0  0  0  0
 62 63  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0116460

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@](O)(COP(O)(O)=O)COP(O)(=O)OC[C@@]([H])(COC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC)OC(=O)CCCCCCCCC\C=C/CCCCCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C46H82O13P2/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-35-37-45(48)55-41-44(42-58-61(53,54)57-40-43(47)39-56-60(50,51)52)59-46(49)38-36-34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h11,13,17-20,23,25,29,31,43-44,47H,3-10,12,14-16,21-22,24,26-28,30,32-42H2,1-2H3,(H,53,54)(H2,50,51,52)/b13-11-,19-17-,20-18-,25-23-,31-29-/t43-,44+/m0/s1

> <INCHI_KEY>
CZUJTIUYJGHASA-SYJGWUOYSA-N

> <FORMULA>
C46H82O13P2

> <MOLECULAR_WEIGHT>
905.097

> <EXACT_MASS>
904.523066696

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
143

> <JCHEM_AVERAGE_POLARIZABILITY>
102.66338755999598

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2S)-2-hydroxy-3-({hydroxy[(2R)-2-[(11Z)-icos-11-enoyloxy]-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy]phosphoryl}oxy)propoxy]phosphonic acid

> <ALOGPS_LOGP>
7.94

> <JCHEM_LOGP>
12.560426524666664

> <ALOGPS_LOGS>
-6.32

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-3

> <JCHEM_PKA>
2.0402061436988346

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.3548792964147474

> <JCHEM_PKA_STRONGEST_BASIC>
-3.410499386302644

> <JCHEM_POLAR_SURFACE_AREA>
195.34999999999997

> <JCHEM_REFRACTIVITY>
248.57280000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
45

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.37e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-hydroxy-3-{[hydroxy((2R)-2-[(11Z)-icos-11-enoyloxy]-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy)phosphoryl]oxy}propoxyphosphonic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0116460 (PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)))

HMDB0116460
     RDKit          3D
PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z))
143142  0  0  0  0  0  0  0  0999 V2000
    2.5994   -4.4948   -1.7859 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6520   -5.6404   -1.8216 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2096   -5.2254   -2.2103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2924   -4.2292   -1.2419 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7549   -3.8812   -1.4642 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4803   -5.1627   -1.2359 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2736   -5.2526   -0.1510 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4341   -4.1531    0.7851 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8377   -3.8355    1.1444 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4847   -2.8048    0.8295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9282   -1.6839   -0.0650 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0590   -1.4499   -1.0464 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5411   -0.2194   -1.2521 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8884    0.8985   -0.5050 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7988    2.0944   -1.4278 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8025    3.2839   -0.9136 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8507    3.4580    0.5933 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5855    4.2612    0.9053 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1749    4.2608    2.3482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6795    2.8908    2.7022 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7181    2.0706    1.7528 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1992    2.5073    3.9166 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7399    1.0454    3.8575 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4164    1.0350    3.0632 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4582   -0.0097    1.9706 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1349   -0.1109    1.5593 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4150    0.2567    0.1173 P   0  0  0  0  0  5  0  0  0  0  0  0
    1.3335    1.6101    0.3349 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6861   -0.7630   -0.4277 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5010    0.7057   -1.1656 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8082    0.7385   -1.1671 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2591    1.3233   -2.5155 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7367    2.6344   -2.5585 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7903    0.5466   -3.6942 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4094    0.4496   -3.7736 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0257   -0.4100   -5.1658 P   0  0  0  0  0  5  0  0  0  0  0  0
   -0.8449   -1.6173   -5.2783 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2422    0.5691   -6.5139 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6483   -0.8675   -5.0039 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2727    0.8696    3.8118 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1142    0.6888    5.0598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8353    0.3977    5.9536 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4451    0.7577    5.7000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7354    0.6886    5.1151 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1145   -0.5336    4.2794 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6437   -0.5852    4.2217 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2554   -1.6412    3.4389 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3351   -1.5239    1.9451 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2826   -0.3851    1.5805 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4644   -0.3118    0.0860 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1979    0.0072   -0.6397 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3643    0.0482   -2.0949 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1837    1.0422   -2.8817 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7638    2.4020   -2.4477 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3865    2.6307   -2.9463 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8253    3.9867   -2.8314 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9663    4.7957   -1.6417 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5355    4.3119   -0.2872 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7844    5.4366    0.7230 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6495    4.9555    2.1168 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7554    3.9579    2.4718 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9188   -4.3594   -0.7138 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1617   -3.5472   -2.1647 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5230   -4.7244   -2.3791 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8982   -6.4138   -2.5942 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5886   -6.1862   -0.8487 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4606   -6.0672   -2.3329 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2670   -4.7077   -3.2305 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2303   -4.6360   -0.1797 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2682   -3.2589   -1.3154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0603   -2.9944   -1.0027 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8584   -3.7041   -2.5933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3586   -5.9601   -1.9133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8227   -6.2211   -0.0225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8901   -3.2465    0.5569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9483   -4.5377    1.8039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3528   -4.6306    1.7798 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5153   -2.5960    1.1868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7306   -0.8337    0.5711 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0387   -2.0171   -0.6097 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4278   -2.3018   -1.5672 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3554   -0.0278   -1.9139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5711    1.1401    0.3228 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8585    0.6231   -0.2608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7853    1.8943   -2.4886 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7618    4.1469   -1.5803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7405    4.1773    0.7190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9994    2.5516    1.1063 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8548    5.2965    0.5516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7918    3.9219    0.2333 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9967    4.5489    3.0229 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3541    5.0258    2.4637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5427    0.5632    3.2809 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6856    0.8235    4.8792 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5311    2.1170    2.7517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2091    0.0454    1.2647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6661   -0.9891    2.5519 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5051   -0.5875    0.1472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3177   -0.2737   -1.1023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3119    1.4418   -0.4595 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3406    1.3890   -2.5271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7313    2.6039   -2.5195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1263    1.1020   -4.6286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3049   -0.4483   -3.7310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8900    0.1374   -7.1423 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1678   -0.6215   -5.8005 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3790    1.8681    6.1613 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4532    0.2068    6.7015 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5608    0.7718    5.9002 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9670    1.5696    4.4407 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7331   -0.3640    3.2539 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7268   -1.4790    4.7316 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9837    0.4444    3.9698 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9572   -0.6875    5.3111 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2894   -1.8649    3.8415 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6754   -2.6014    3.6820 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3682   -1.3282    1.4930 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7641   -2.4282    1.4874 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2476   -0.5859    2.0506 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8549    0.5967    1.8901 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8551   -1.3316   -0.2436 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2827    0.4106   -0.1518 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5428   -0.9185   -0.4793 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6556    0.8606   -0.1821 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7253   -0.9251   -2.5541 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3614    0.9356   -3.9994 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9200    2.5872   -1.3670 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4254    3.0997   -2.9723 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4068    2.3722   -4.0612 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6850    1.8207   -2.5718 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7565    3.9838   -3.2296 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3950    4.5730   -3.6483 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9866    5.3063   -1.5571 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3010    5.7380   -1.8179 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0876    3.4259    0.0044 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4221    4.1612   -0.2530 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7071    5.9818    0.4773 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9278    6.1647    0.5527 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6928    4.3669    2.2721 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6449    5.7662    2.8686 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7152    3.8042    3.5581 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6410    2.9884    1.9826 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7651    4.4047    2.2694 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  2  0
 27 29  1  0
 27 30  1  0
 30 31  1  0
 31 32  1  0
 32 33  1  0
 32 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  2  0
 36 38  1  0
 36 39  1  0
 24 40  1  0
 40 41  1  0
 41 42  2  0
 41 43  1  0
 43 44  1  0
 44 45  1  0
 45 46  1  0
 46 47  1  0
 47 48  1  0
 48 49  1  0
 49 50  1  0
 50 51  1  0
 51 52  1  0
 52 53  2  0
 53 54  1  0
 54 55  1  0
 55 56  1  0
 56 57  1  0
 57 58  1  0
 58 59  1  0
 59 60  1  0
 60 61  1  0
  1 62  1  0
  1 63  1  0
  1 64  1  0
  2 65  1  0
  2 66  1  0
  3 67  1  0
  3 68  1  0
  4 69  1  0
  4 70  1  0
  5 71  1  0
  5 72  1  0
  6 73  1  0
  7 74  1  0
  8 75  1  0
  8 76  1  0
  9 77  1  0
 10 78  1  0
 11 79  1  0
 11 80  1  0
 12 81  1  0
 13 82  1  0
 14 83  1  0
 14 84  1  0
 15 85  1  0
 16 86  1  0
 17 87  1  0
 17 88  1  0
 18 89  1  0
 18 90  1  0
 19 91  1  0
 19 92  1  0
 23 93  1  0
 23 94  1  0
 24 95  1  6
 25 96  1  0
 25 97  1  0
 29 98  1  0
 31 99  1  0
 31100  1  0
 32101  1  1
 33102  1  0
 34103  1  0
 34104  1  0
 38105  1  0
 39106  1  0
 43107  1  0
 43108  1  0
 44109  1  0
 44110  1  0
 45111  1  0
 45112  1  0
 46113  1  0
 46114  1  0
 47115  1  0
 47116  1  0
 48117  1  0
 48118  1  0
 49119  1  0
 49120  1  0
 50121  1  0
 50122  1  0
 51123  1  0
 51124  1  0
 52125  1  0
 53126  1  0
 54127  1  0
 54128  1  0
 55129  1  0
 55130  1  0
 56131  1  0
 56132  1  0
 57133  1  0
 57134  1  0
 58135  1  0
 58136  1  0
 59137  1  0
 59138  1  0
 60139  1  0
 60140  1  0
 61141  1  0
 61142  1  0
 61143  1  0
M  END
Download

PDB for HMDB0116460 (PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)))

HEADER    PROTEIN                                 17-SEP-17   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z))                
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-SEP-17         0                                  
HETATM    1  H   UNK     0       5.199   1.798   0.000  0.00  0.00           H+0
HETATM    2  C   UNK     0      -4.446   0.673   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.772   1.437   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -7.097   0.673   0.000  0.00  0.00           O+0
HETATM    5  H   UNK     0      -3.680  -0.652   0.000  0.00  0.00           H+0
HETATM    6  O   UNK     0      -5.212  -0.652   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      -3.120   1.439   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -1.794   0.673   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0       1.487   0.642   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       2.813  -0.124   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.139   0.642   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.465  -0.124   0.000  0.00  0.00           C+0
HETATM   13  P   UNK     0       0.092   1.210   0.000  0.00  0.00           P+0
HETATM   14  O   UNK     0      -0.583   0.039   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       0.092   2.605   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0       3.511   1.729   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       6.791   0.641   0.000  0.00  0.00           O+0
HETATM   18  P   UNK     0       8.269   1.037   0.000  0.00  0.00           P+0
HETATM   19  O   UNK     0       8.269   2.568   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       9.748   0.641   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       7.504  -0.289   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -8.423   1.437   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -8.423   2.877   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      -9.756   0.665   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0     -11.089   1.437   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0     -12.422   0.665   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0     -13.755   1.437   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0     -15.295   1.437   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -16.628   0.665   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0     -17.961   1.437   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0     -19.501   1.437   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0     -20.834   0.665   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0     -22.167   1.437   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0     -23.707   1.437   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0     -25.040   0.665   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0     -26.373   1.437   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0     -27.913   1.437   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0     -29.246   0.665   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0     -30.579   1.437   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0     -31.912   0.665   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0     -33.245   1.437   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0     -34.578   0.665   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      -6.601  -1.436   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0      -6.601  -2.876   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0      -7.934  -0.665   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      -9.267  -1.436   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0     -10.600  -0.665   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0     -11.933  -1.436   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0     -13.266  -0.665   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0     -14.599  -1.436   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0     -15.932  -0.665   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0     -17.265  -1.436   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0     -18.598  -0.665   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0     -19.931  -1.436   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0     -21.471  -1.436   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0     -22.804  -0.665   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0     -24.137  -1.436   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0     -25.470  -0.665   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0     -26.803  -1.436   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0     -28.136  -0.665   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0     -29.469  -1.436   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0     -30.802  -0.665   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0     -32.135  -1.436   0.000  0.00  0.00           C+0
CONECT    1   11                                                            
CONECT    2    3    6    5    7                                             
CONECT    3    2    4                                                       
CONECT    4    3   22                                                       
CONECT    5    2                                                            
CONECT    6    2   43                                                       
CONECT    7    2    8                                                       
CONECT    8    7   13                                                       
CONECT    9   10   13                                                       
CONECT   10    9   11                                                       
CONECT   11   10   16    1   12                                             
CONECT   12   11   17                                                       
CONECT   13    9   14   15    8                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   11                                                            
CONECT   17   12   18                                                       
CONECT   18   17   19   20   21                                             
CONECT   19   18                                                            
CONECT   20   18                                                            
CONECT   21   18                                                            
CONECT   22    4   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41                                                            
CONECT   43    6   44   45                                                  
CONECT   44   43                                                            
CONECT   45   43   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62                                                       
CONECT   62   61   63                                                       
CONECT   63   62                                                            
MASTER        0    0    0    0    0    0    0    0   63    0  124    0
END
Download

3D PDB for HMDB0116460 (PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)))

COMPND    HMDB0116460
HETATM    1  C1  UNL     1       2.599  -4.495  -1.786  1.00  0.00           C  
HETATM    2  C2  UNL     1       1.652  -5.640  -1.822  1.00  0.00           C  
HETATM    3  C3  UNL     1       0.210  -5.225  -2.210  1.00  0.00           C  
HETATM    4  C4  UNL     1      -0.292  -4.229  -1.242  1.00  0.00           C  
HETATM    5  C5  UNL     1      -1.755  -3.881  -1.464  1.00  0.00           C  
HETATM    6  C6  UNL     1      -2.480  -5.163  -1.236  1.00  0.00           C  
HETATM    7  C7  UNL     1      -3.274  -5.253  -0.151  1.00  0.00           C  
HETATM    8  C8  UNL     1      -3.434  -4.153   0.785  1.00  0.00           C  
HETATM    9  C9  UNL     1      -4.838  -3.835   1.144  1.00  0.00           C  
HETATM   10  C10 UNL     1      -5.485  -2.805   0.830  1.00  0.00           C  
HETATM   11  C11 UNL     1      -4.928  -1.684  -0.065  1.00  0.00           C  
HETATM   12  C12 UNL     1      -6.059  -1.450  -1.046  1.00  0.00           C  
HETATM   13  C13 UNL     1      -6.541  -0.219  -1.252  1.00  0.00           C  
HETATM   14  C14 UNL     1      -5.888   0.898  -0.505  1.00  0.00           C  
HETATM   15  C15 UNL     1      -5.799   2.094  -1.428  1.00  0.00           C  
HETATM   16  C16 UNL     1      -5.802   3.284  -0.914  1.00  0.00           C  
HETATM   17  C17 UNL     1      -5.851   3.458   0.593  1.00  0.00           C  
HETATM   18  C18 UNL     1      -4.586   4.261   0.905  1.00  0.00           C  
HETATM   19  C19 UNL     1      -4.175   4.261   2.348  1.00  0.00           C  
HETATM   20  C20 UNL     1      -3.679   2.891   2.702  1.00  0.00           C  
HETATM   21  O1  UNL     1      -3.718   2.071   1.753  1.00  0.00           O  
HETATM   22  O2  UNL     1      -3.199   2.507   3.917  1.00  0.00           O  
HETATM   23  C21 UNL     1      -2.740   1.045   3.858  1.00  0.00           C  
HETATM   24  C22 UNL     1      -1.416   1.035   3.063  1.00  0.00           C  
HETATM   25  C23 UNL     1      -1.458  -0.010   1.971  1.00  0.00           C  
HETATM   26  O3  UNL     1      -0.135  -0.111   1.559  1.00  0.00           O  
HETATM   27  P1  UNL     1       0.415   0.257   0.117  1.00  0.00           P  
HETATM   28  O4  UNL     1       1.333   1.610   0.335  1.00  0.00           O  
HETATM   29  O5  UNL     1       1.686  -0.763  -0.428  1.00  0.00           O  
HETATM   30  O6  UNL     1      -0.501   0.706  -1.166  1.00  0.00           O  
HETATM   31  C24 UNL     1      -1.808   0.738  -1.167  1.00  0.00           C  
HETATM   32  C25 UNL     1      -2.259   1.323  -2.516  1.00  0.00           C  
HETATM   33  O7  UNL     1      -1.737   2.634  -2.559  1.00  0.00           O  
HETATM   34  C26 UNL     1      -1.790   0.547  -3.694  1.00  0.00           C  
HETATM   35  O8  UNL     1      -0.409   0.450  -3.774  1.00  0.00           O  
HETATM   36  P2  UNL     1       0.026  -0.410  -5.166  1.00  0.00           P  
HETATM   37  O9  UNL     1      -0.845  -1.617  -5.278  1.00  0.00           O  
HETATM   38  O10 UNL     1      -0.242   0.569  -6.514  1.00  0.00           O  
HETATM   39  O11 UNL     1       1.648  -0.867  -5.004  1.00  0.00           O  
HETATM   40  O12 UNL     1      -0.273   0.870   3.812  1.00  0.00           O  
HETATM   41  C27 UNL     1       0.114   0.689   5.060  1.00  0.00           C  
HETATM   42  O13 UNL     1      -0.835   0.398   5.954  1.00  0.00           O  
HETATM   43  C28 UNL     1       1.445   0.758   5.700  1.00  0.00           C  
HETATM   44  C29 UNL     1       2.735   0.689   5.115  1.00  0.00           C  
HETATM   45  C30 UNL     1       3.115  -0.534   4.279  1.00  0.00           C  
HETATM   46  C31 UNL     1       4.644  -0.585   4.222  1.00  0.00           C  
HETATM   47  C32 UNL     1       5.255  -1.641   3.439  1.00  0.00           C  
HETATM   48  C33 UNL     1       5.335  -1.524   1.945  1.00  0.00           C  
HETATM   49  C34 UNL     1       6.283  -0.385   1.580  1.00  0.00           C  
HETATM   50  C35 UNL     1       6.464  -0.312   0.086  1.00  0.00           C  
HETATM   51  C36 UNL     1       5.198   0.007  -0.640  1.00  0.00           C  
HETATM   52  C37 UNL     1       5.364   0.048  -2.095  1.00  0.00           C  
HETATM   53  C38 UNL     1       5.184   1.042  -2.882  1.00  0.00           C  
HETATM   54  C39 UNL     1       4.764   2.402  -2.448  1.00  0.00           C  
HETATM   55  C40 UNL     1       3.386   2.631  -2.946  1.00  0.00           C  
HETATM   56  C41 UNL     1       2.825   3.987  -2.831  1.00  0.00           C  
HETATM   57  C42 UNL     1       2.966   4.796  -1.642  1.00  0.00           C  
HETATM   58  C43 UNL     1       2.535   4.312  -0.287  1.00  0.00           C  
HETATM   59  C44 UNL     1       2.784   5.437   0.723  1.00  0.00           C  
HETATM   60  C45 UNL     1       2.649   4.956   2.117  1.00  0.00           C  
HETATM   61  C46 UNL     1       3.755   3.958   2.472  1.00  0.00           C  
HETATM   62  H1  UNL     1       2.919  -4.359  -0.714  1.00  0.00           H  
HETATM   63  H2  UNL     1       2.162  -3.547  -2.165  1.00  0.00           H  
HETATM   64  H3  UNL     1       3.523  -4.724  -2.379  1.00  0.00           H  
HETATM   65  H4  UNL     1       1.898  -6.414  -2.594  1.00  0.00           H  
HETATM   66  H5  UNL     1       1.589  -6.186  -0.849  1.00  0.00           H  
HETATM   67  H6  UNL     1      -0.461  -6.067  -2.333  1.00  0.00           H  
HETATM   68  H7  UNL     1       0.267  -4.708  -3.231  1.00  0.00           H  
HETATM   69  H8  UNL     1      -0.230  -4.636  -0.180  1.00  0.00           H  
HETATM   70  H9  UNL     1       0.268  -3.259  -1.315  1.00  0.00           H  
HETATM   71  H10 UNL     1      -2.060  -2.994  -1.003  1.00  0.00           H  
HETATM   72  H11 UNL     1      -1.858  -3.704  -2.593  1.00  0.00           H  
HETATM   73  H12 UNL     1      -2.359  -5.960  -1.913  1.00  0.00           H  
HETATM   74  H13 UNL     1      -3.823  -6.221  -0.023  1.00  0.00           H  
HETATM   75  H14 UNL     1      -2.890  -3.246   0.557  1.00  0.00           H  
HETATM   76  H15 UNL     1      -2.948  -4.538   1.804  1.00  0.00           H  
HETATM   77  H16 UNL     1      -5.353  -4.631   1.780  1.00  0.00           H  
HETATM   78  H17 UNL     1      -6.515  -2.596   1.187  1.00  0.00           H  
HETATM   79  H18 UNL     1      -4.731  -0.834   0.571  1.00  0.00           H  
HETATM   80  H19 UNL     1      -4.039  -2.017  -0.610  1.00  0.00           H  
HETATM   81  H20 UNL     1      -6.428  -2.302  -1.567  1.00  0.00           H  
HETATM   82  H21 UNL     1      -7.355  -0.028  -1.914  1.00  0.00           H  
HETATM   83  H22 UNL     1      -6.571   1.140   0.323  1.00  0.00           H  
HETATM   84  H23 UNL     1      -4.858   0.623  -0.261  1.00  0.00           H  
HETATM   85  H24 UNL     1      -5.785   1.894  -2.489  1.00  0.00           H  
HETATM   86  H25 UNL     1      -5.762   4.147  -1.580  1.00  0.00           H  
HETATM   87  H26 UNL     1      -6.741   4.177   0.719  1.00  0.00           H  
HETATM   88  H27 UNL     1      -5.999   2.552   1.106  1.00  0.00           H  
HETATM   89  H28 UNL     1      -4.855   5.296   0.552  1.00  0.00           H  
HETATM   90  H29 UNL     1      -3.792   3.922   0.233  1.00  0.00           H  
HETATM   91  H30 UNL     1      -4.997   4.549   3.023  1.00  0.00           H  
HETATM   92  H31 UNL     1      -3.354   5.026   2.464  1.00  0.00           H  
HETATM   93  H32 UNL     1      -3.543   0.563   3.281  1.00  0.00           H  
HETATM   94  H33 UNL     1      -2.686   0.823   4.879  1.00  0.00           H  
HETATM   95  H34 UNL     1      -1.531   2.117   2.752  1.00  0.00           H  
HETATM   96  H35 UNL     1      -2.209   0.045   1.265  1.00  0.00           H  
HETATM   97  H36 UNL     1      -1.666  -0.989   2.552  1.00  0.00           H  
HETATM   98  H37 UNL     1       2.505  -0.587   0.147  1.00  0.00           H  
HETATM   99  H38 UNL     1      -2.318  -0.274  -1.102  1.00  0.00           H  
HETATM  100  H39 UNL     1      -2.312   1.442  -0.460  1.00  0.00           H  
HETATM  101  H40 UNL     1      -3.341   1.389  -2.527  1.00  0.00           H  
HETATM  102  H41 UNL     1      -0.731   2.604  -2.519  1.00  0.00           H  
HETATM  103  H42 UNL     1      -2.126   1.102  -4.629  1.00  0.00           H  
HETATM  104  H43 UNL     1      -2.305  -0.448  -3.731  1.00  0.00           H  
HETATM  105  H44 UNL     1      -0.890   0.137  -7.142  1.00  0.00           H  
HETATM  106  H45 UNL     1       2.168  -0.621  -5.800  1.00  0.00           H  
HETATM  107  H46 UNL     1       1.379   1.868   6.161  1.00  0.00           H  
HETATM  108  H47 UNL     1       1.453   0.207   6.701  1.00  0.00           H  
HETATM  109  H48 UNL     1       3.561   0.772   5.900  1.00  0.00           H  
HETATM  110  H49 UNL     1       2.967   1.570   4.441  1.00  0.00           H  
HETATM  111  H50 UNL     1       2.733  -0.364   3.254  1.00  0.00           H  
HETATM  112  H51 UNL     1       2.727  -1.479   4.732  1.00  0.00           H  
HETATM  113  H52 UNL     1       4.984   0.444   3.970  1.00  0.00           H  
HETATM  114  H53 UNL     1       4.957  -0.687   5.311  1.00  0.00           H  
HETATM  115  H54 UNL     1       6.289  -1.865   3.841  1.00  0.00           H  
HETATM  116  H55 UNL     1       4.675  -2.601   3.682  1.00  0.00           H  
HETATM  117  H56 UNL     1       4.368  -1.328   1.493  1.00  0.00           H  
HETATM  118  H57 UNL     1       5.764  -2.428   1.487  1.00  0.00           H  
HETATM  119  H58 UNL     1       7.248  -0.586   2.051  1.00  0.00           H  
HETATM  120  H59 UNL     1       5.855   0.597   1.890  1.00  0.00           H  
HETATM  121  H60 UNL     1       6.855  -1.332  -0.244  1.00  0.00           H  
HETATM  122  H61 UNL     1       7.283   0.411  -0.152  1.00  0.00           H  
HETATM  123  H62 UNL     1       4.543  -0.918  -0.479  1.00  0.00           H  
HETATM  124  H63 UNL     1       4.656   0.861  -0.182  1.00  0.00           H  
HETATM  125  H64 UNL     1       5.725  -0.925  -2.554  1.00  0.00           H  
HETATM  126  H65 UNL     1       5.361   0.936  -3.999  1.00  0.00           H  
HETATM  127  H66 UNL     1       4.920   2.587  -1.367  1.00  0.00           H  
HETATM  128  H67 UNL     1       5.425   3.100  -2.972  1.00  0.00           H  
HETATM  129  H68 UNL     1       3.407   2.372  -4.061  1.00  0.00           H  
HETATM  130  H69 UNL     1       2.685   1.821  -2.572  1.00  0.00           H  
HETATM  131  H70 UNL     1       1.756   3.984  -3.230  1.00  0.00           H  
HETATM  132  H71 UNL     1       3.395   4.573  -3.648  1.00  0.00           H  
HETATM  133  H72 UNL     1       3.987   5.306  -1.557  1.00  0.00           H  
HETATM  134  H73 UNL     1       2.301   5.738  -1.818  1.00  0.00           H  
HETATM  135  H74 UNL     1       3.088   3.426   0.004  1.00  0.00           H  
HETATM  136  H75 UNL     1       1.422   4.161  -0.253  1.00  0.00           H  
HETATM  137  H76 UNL     1       3.707   5.982   0.477  1.00  0.00           H  
HETATM  138  H77 UNL     1       1.928   6.165   0.553  1.00  0.00           H  
HETATM  139  H78 UNL     1       1.693   4.367   2.272  1.00  0.00           H  
HETATM  140  H79 UNL     1       2.645   5.766   2.869  1.00  0.00           H  
HETATM  141  H80 UNL     1       3.715   3.804   3.558  1.00  0.00           H  
HETATM  142  H81 UNL     1       3.641   2.988   1.983  1.00  0.00           H  
HETATM  143  H82 UNL     1       4.765   4.405   2.269  1.00  0.00           H  
CONECT    1    2   62   63   64
CONECT    2    3   65   66
CONECT    3    4   67   68
CONECT    4    5   69   70
CONECT    5    6   71   72
CONECT    6    7    7   73
CONECT    7    8   74
CONECT    8    9   75   76
CONECT    9   10   10   77
CONECT   10   11   78
CONECT   11   12   79   80
CONECT   12   13   13   81
CONECT   13   14   82
CONECT   14   15   83   84
CONECT   15   16   16   85
CONECT   16   17   86
CONECT   17   18   87   88
CONECT   18   19   89   90
CONECT   19   20   91   92
CONECT   20   21   21   22
CONECT   22   23
CONECT   23   24   93   94
CONECT   24   25   40   95
CONECT   25   26   96   97
CONECT   26   27
CONECT   27   28   28   29   30
CONECT   29   98
CONECT   30   31
CONECT   31   32   99  100
CONECT   32   33   34  101
CONECT   33  102
CONECT   34   35  103  104
CONECT   35   36
CONECT   36   37   37   38   39
CONECT   38  105
CONECT   39  106
CONECT   40   41
CONECT   41   42   42   43
CONECT   43   44  107  108
CONECT   44   45  109  110
CONECT   45   46  111  112
CONECT   46   47  113  114
CONECT   47   48  115  116
CONECT   48   49  117  118
CONECT   49   50  119  120
CONECT   50   51  121  122
CONECT   51   52  123  124
CONECT   52   53   53  125
CONECT   53   54  126
CONECT   54   55  127  128
CONECT   55   56  129  130
CONECT   56   57  131  132
CONECT   57   58  133  134
CONECT   58   59  135  136
CONECT   59   60  137  138
CONECT   60   61  139  140
CONECT   61  141  142  143
END
Download

SMILES for HMDB0116460 (PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)))

[H][C@](O)(COP(O)(O)=O)COP(O)(=O)OC[C@@]([H])(COC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC)OC(=O)CCCCCCCCC\C=C/CCCCCCCC
Download

INCHI for HMDB0116460 (PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)))

InChI=1S/C46H82O13P2/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-35-37-45(48)55-41-44(42-58-61(53,54)57-40-43(47)39-56-60(50,51)52)59-46(49)38-36-34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h11,13,17-20,23,25,29,31,43-44,47H,3-10,12,14-16,21-22,24,26-28,30,32-42H2,1-2H3,(H,53,54)(H2,50,51,52)/b13-11-,19-17-,20-18-,25-23-,31-29-/t43-,44+/m0/s1
Download
View in JSmolView Stereo Labels
Synonyms
ValueSource
1-Arachidonoyl-2-eicosenoyl-sn-glycero-3-phospho-(1'-sn-glycerol-3'-phosphate)HMDB
PGP(20:4/20:1)HMDB
PGP(20:4n6/20:1n9)HMDB
PGP(20:4W6/20:1W9)HMDB
PGP(40:5)HMDB
3-sn-Phosphatidyl-1'-sn-glycerol 3'-phosphoric acidHMDB
1-(5Z,8Z,11Z,14Z-Eicosatetraenoyl)-2-(11-eicosenoyl)-sn-glycero-3-phospho-(1'-sn-glycerol-3'-phosphate)HMDB
[(2S)-2-Hydroxy-3-({hydroxy[(2R)-2-[(11Z)-icos-11-enoyloxy]-3-[(8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy]phosphoryl}oxy)propoxy]phosphonateHMDB
1-arachidonoyl-2-eicosenoyl-sn-glycero-3-phospho-(1'-sn-glycerol-3'-phosphate) SMPDB, HMDB
PGP(20:4/20:1) SMPDB, HMDB
PGP(20:4n6/20:1n9) SMPDB, HMDB
PGP(20:4w6/20:1w9) SMPDB, HMDB
PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z))SMPDB
Chemical FormulaC46H82O13P2
Average Molecular Weight905.097
Monoisotopic Molecular Weight904.523066696
IUPAC Name[(2S)-2-hydroxy-3-({hydroxy[(2R)-2-[(11Z)-icos-11-enoyloxy]-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy]phosphoryl}oxy)propoxy]phosphonic acid
Traditional Name(2S)-2-hydroxy-3-{[hydroxy((2R)-2-[(11Z)-icos-11-enoyloxy]-3-[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoyloxy]propoxy)phosphoryl]oxy}propoxyphosphonic acid
CAS Registry NumberNot Available
SMILES
[H][C@](O)(COP(O)(O)=O)COP(O)(=O)OC[C@@]([H])(COC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/CCCCC)OC(=O)CCCCCCCCC\C=C/CCCCCCCC
InChI Identifier
InChI=1S/C46H82O13P2/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-35-37-45(48)55-41-44(42-58-61(53,54)57-40-43(47)39-56-60(50,51)52)59-46(49)38-36-34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h11,13,17-20,23,25,29,31,43-44,47H,3-10,12,14-16,21-22,24,26-28,30,32-42H2,1-2H3,(H,53,54)(H2,50,51,52)/b13-11-,19-17-,20-18-,25-23-,31-29-/t43-,44+/m0/s1
InChI KeyCZUJTIUYJGHASA-SYJGWUOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phosphatidylglycerophosphates. These are glycerophosphoglycerophosphates in which two fatty acids are bonded to the 1-glycerol moiety through ester linkages.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphoglycerophosphates
Direct ParentPhosphatidylglycerophosphates
Alternative Parents
Substituents
  • Diacylglycerophosphoglycerophosphate
  • Sn-glycerol-3-phosphate
  • Fatty acid ester
  • Monoalkyl phosphate
  • Dialkyl phosphate
  • Dicarboxylic acid or derivatives
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Secondary alcohol
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Organooxygen compound
  • Organic oxide
  • Organic oxygen compound
  • Alcohol
  • Carbonyl group
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Source
Process
Naturally occurring process
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP7.94ALOGPS
logP12.56ChemAxon
logS-6.3ALOGPS
pKa (Strongest Acidic)1.35ChemAxon
pKa (Strongest Basic)-3.4ChemAxon
Physiological Charge-3ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area195.35 ŲChemAxon
Rotatable Bond Count45ChemAxon
Refractivity248.57 m³·mol⁻¹ChemAxon
Polarizability102.66 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+296.41430932474
DeepCCS[M-H]-294.51930932474
DeepCCS[M-2H]-328.07330932474
DeepCCS[M+Na]+302.19130932474
AllCCS[M+H]+305.532859911
AllCCS[M+H-H2O]+305.732859911
AllCCS[M+NH4]+305.432859911
AllCCS[M+Na]+305.332859911
AllCCS[M-H]-297.032859911
AllCCS[M+Na-2H]-304.332859911
AllCCS[M+HCOO]-312.232859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022.6.92 minutes32390414
Predicted by Siyang on May 30, 202229.2887 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20222.54 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid5489.0 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid209.8 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid328.1 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid210.7 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid1138.4 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid1767.0 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid1102.4 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)414.2 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid3172.6 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid1237.1 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid2562.7 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid1272.9 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid699.6 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate233.3 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA522.4 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water11.0 seconds40023050

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 10V, Positive-QTOFsplash10-052r-1392034152-474162bc5df619094b012019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 20V, Positive-QTOFsplash10-000j-2292011220-71837ed7bed14a14d3a42019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 40V, Positive-QTOFsplash10-0a4i-9385023410-255dba159ac75eeb371a2019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 10V, Negative-QTOFsplash10-0udr-6096021113-263935908c84bb226a812019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 20V, Negative-QTOFsplash10-0fb9-9032000000-c33ac65811802f9408262019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 40V, Negative-QTOFsplash10-004i-9000000000-cbd4af5655ef5fa5e1662019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 10V, Positive-QTOFsplash10-0a4i-5120007569-cdf6c902c8212f8976572021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 20V, Positive-QTOFsplash10-0pb9-0310009530-28b1c416a2295a19f4452021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 40V, Positive-QTOFsplash10-0uxr-1293023000-6aec76606f918d02ca6d2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 10V, Negative-QTOFsplash10-0udi-0010000009-e91f030a3cf494f863512021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 20V, Negative-QTOFsplash10-0udj-4092164003-7e61ac3ab8092f3979652021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PGP(20:4(5Z,8Z,11Z,14Z)/20:1(11Z)) 40V, Negative-QTOFsplash10-0fba-3092360000-6bf1d3f0ff54905044322021-09-24Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID74878172
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131823115
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available