| Record Information | 
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| Version | 5.0 | 
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| Status | Expected but not Quantified | 
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| Creation Date | 2017-09-09 06:50:45 UTC | 
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| Update Date | 2022-11-30 19:26:27 UTC | 
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| HMDB ID | HMDB0116054 | 
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| Secondary Accession Numbers | None | 
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| Metabolite Identification | 
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| Common Name | CDP-DG(18:2(9Z,11Z)/i-14:0) | 
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| Description | CDP-DG(18:2(9Z,11Z)/i-14:0) is a cytidine diphosphate diacylglycerol or CDP-diacylglycerol (CDP-DG). CDP-diacylglycerol is an important branchpoint intermediate in eukaryotic phospholipid biosynthesis and could be a key regulatory molecule in phospholipid metabolism. It is a glycerophospholipid in which a cytidine diphosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, CDP-diacylglycerols can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. CDP-DG(18:2(9Z,11Z)/i-14:0), in particular, consists of one chain of (9Z,11Z)-octadecadienoic acid at the C-1 position and one chain of isotetradecanoic acid at the C-2 position. Cytidine diphosphate diacylglycerols are rarely noticed in analyses of lipid compositions of tissues, as they are present is such small amounts (perhaps only 0.05% or so of the total phospholipids). | 
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| Structure | [H][C@@](COC(=O)CCCCCCC\C=C/C=C\CCCCCC)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H](C(O)[C@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCCCCCC(C)CInChI=1S/C44H77N3O15P2/c1-4-5-6-7-8-9-10-11-12-13-14-15-19-22-25-28-39(48)57-32-36(60-40(49)29-26-23-20-17-16-18-21-24-27-35(2)3)33-58-63(53,54)62-64(55,56)59-34-37-41(50)42(51)43(61-37)47-31-30-38(45)46-44(47)52/h9-12,30-31,35-37,41-43,50-51H,4-8,13-29,32-34H2,1-3H3,(H,53,54)(H,55,56)(H2,45,46,52)/b10-9-,12-11-/t36-,37-,41+,42?,43-/m1/s1 | 
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| Synonyms | | Value | Source | 
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 | 1-(9Z,11Z)-Octadecadienoyl-2-isotetradecanoyl-sn-glycero-3-CDP | HMDB |  | 1-(9Z,11Z)-Octadecadienoyl-2-isotetradecanoyl-sn-glycero-3-cytidine-5'-diphosphate | HMDB |  | CDP-DG(18:2/I-14:0) | HMDB |  | CDP-DG(18:2N7/I-14:0) | HMDB |  | CDP-DG(18:2W7/I-14:0) | HMDB |  | CDP-DG(32:2) | HMDB |  | CDP-Diacylglycerol(18:2(9Z,11Z)/I-14:0) | HMDB |  | CDP-Diacylglycerol(18:2/I-14:0) | HMDB |  | CDP-Diacylglycerol(18:2N7/I-14:0) | HMDB |  | CDP-Diacylglycerol(18:2W7/I-14:0) | HMDB |  | CDP-Diacylglycerol(32:2) | HMDB |  | {[(2R,3R,5R)-3,4-dihydroxy-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-2-yl]methoxy}({hydroxy[(2R)-2-[(12-methyltridecanoyl)oxy]-3-[(9Z,11Z)-octadeca-9,11-dienoyloxy]propoxy]phosphoryl}oxy)phosphinate | HMDB |  | CDP-DG(18:2(9Z,11Z)/i-14:0) | SMPDB | 
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| Chemical Formula | C44H77N3O15P2 | 
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| Average Molecular Weight | 950.054 | 
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| Monoisotopic Molecular Weight | 949.482992787 | 
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| IUPAC Name | {[(2R,3R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}({hydroxy[(2R)-2-[(12-methyltridecanoyl)oxy]-3-[(9Z,11Z)-octadeca-9,11-dienoyloxy]propoxy]phosphoryl}oxy)phosphinic acid | 
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| Traditional Name | [(2R,3R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy([hydroxy((2R)-2-[(12-methyltridecanoyl)oxy]-3-[(9Z,11Z)-octadeca-9,11-dienoyloxy]propoxy)phosphoryl]oxy)phosphinic acid | 
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| CAS Registry Number | Not Available | 
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| SMILES | [H][C@@](COC(=O)CCCCCCC\C=C/C=C\CCCCCC)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H](C(O)[C@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCCCCCC(C)C | 
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| InChI Identifier | InChI=1S/C44H77N3O15P2/c1-4-5-6-7-8-9-10-11-12-13-14-15-19-22-25-28-39(48)57-32-36(60-40(49)29-26-23-20-17-16-18-21-24-27-35(2)3)33-58-63(53,54)62-64(55,56)59-34-37-41(50)42(51)43(61-37)47-31-30-38(45)46-44(47)52/h9-12,30-31,35-37,41-43,50-51H,4-8,13-29,32-34H2,1-3H3,(H,53,54)(H,55,56)(H2,45,46,52)/b10-9-,12-11-/t36-,37-,41+,42?,43-/m1/s1 | 
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| InChI Key | OUYWRMPNLRNGRD-SJQHQZAESA-N | 
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| Chemical Taxonomy | 
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| Description | Belongs to the class of organic compounds known as cdp-diacylglycerols. These are glycerolipids containing a diacylglycerol, with a cytidine diphosphate attached to the oxygen O1 or O2 of the glycerol part. | 
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| Kingdom | Organic compounds | 
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| Super Class | Lipids and lipid-like molecules | 
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| Class | Glycerophospholipids | 
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| Sub Class | CDP-glycerols | 
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| Direct Parent | CDP-diacylglycerols | 
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| Alternative Parents |  | 
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| Substituents | Cdp-diacylglycerolPyrimidine ribonucleoside diphosphateDiacyl-glycerol-3-pyrophosphatePentose phosphatePentose-5-phosphateGlycosyl compoundN-glycosyl compoundMonosaccharide phosphateOrganic pyrophosphateFatty acid esterMonoalkyl phosphateHydroxypyrimidineDicarboxylic acid or derivativesFatty acylAlkyl phosphateHydropyrimidinePyrimidinePhosphoric acid esterMonosaccharideOrganic phosphoric acid derivativeHeteroaromatic compoundTetrahydrofuranCarboxylic acid ester1,2-diolSecondary alcoholOxacycleOrganoheterocyclic compoundAzacycleCarboxylic acid derivativeOrganopnictogen compoundOrganic oxideAlcoholOrganic nitrogen compoundHydrocarbon derivativeCarbonyl groupOrganic oxygen compoundOrganooxygen compoundOrganonitrogen compoundAromatic heteromonocyclic compound
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| Molecular Framework | Aromatic heteromonocyclic compounds | 
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| External Descriptors | Not Available | 
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| Ontology | 
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| Physiological effect | Not Available | 
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| Disposition |  | 
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| Process | Naturally occurring processBiological processBiochemical pathwayDisease pathwayCardiolipin Biosynthesis CL(a-13:0/18:2(9Z,11Z)/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0043330)Cardiolipin Biosynthesis CL(a-13:0/a-21:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0044619)Cardiolipin Biosynthesis CL(a-13:0/a-25:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0044942)Cardiolipin Biosynthesis CL(a-13:0/i-12:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0045266)Cardiolipin Biosynthesis CL(a-13:0/i-17:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0046876)Cardiolipin Biosynthesis CL(a-13:0/i-24:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0048808)Cardiolipin Biosynthesis CL(i-12:0/18:2(9Z,11Z)/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0049131)Cardiolipin Biosynthesis CL(i-12:0/i-13:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0051394)Cardiolipin Biosynthesis CL(i-12:0/i-14:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0051718)Cardiolipin Biosynthesis CL(i-12:0/i-16:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0052363)Cardiolipin Biosynthesis CL(i-12:0/i-18:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0053009)Cardiolipin Biosynthesis CL(i-12:0/i-19:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0053332)Cardiolipin Biosynthesis CL(i-12:0/i-24:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0054624)Cardiolipin Biosynthesis CL(i-13:0/i-14:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0057538)Cardiolipin Biosynthesis CL(i-13:0/i-16:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0058195)Cardiolipin Biosynthesis CL(a-13:0/a-15:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0043975)Cardiolipin Biosynthesis CL(a-13:0/a-17:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0044297)Cardiolipin Biosynthesis CL(a-13:0/i-13:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0045587)Cardiolipin Biosynthesis CL(a-13:0/i-15:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0046230)Cardiolipin Biosynthesis CL(a-13:0/i-19:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0047521)Cardiolipin Biosynthesis CL(a-13:0/i-20:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0047844)Cardiolipin Biosynthesis CL(a-13:0/i-21:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0048163)Cardiolipin Biosynthesis CL(i-12:0/a-25:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0050745)Cardiolipin Biosynthesis CL(i-12:0/i-22:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0054302)Cardiolipin Biosynthesis CL(i-13:0/18:2(9Z,11Z)/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0054946)Cardiolipin Biosynthesis CL(i-13:0/a-15:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0055594)Cardiolipin Biosynthesis CL(i-13:0/a-17:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0055916)Cardiolipin Biosynthesis CL(i-13:0/i-21:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0059845)Cardiolipin Biosynthesis CL(i-13:0/i-22:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0060180)Cardiolipin Biosynthesis CL(i-13:0/i-24:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0060510)Cardiolipin Biosynthesis CL(i-14:0/a-13:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0060838)Cardiolipin Biosynthesis CL(a-13:0/a-13:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0043652)Cardiolipin Biosynthesis CL(a-13:0/i-14:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0045906)Cardiolipin Biosynthesis CL(a-13:0/i-16:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0046553)Cardiolipin Biosynthesis CL(a-13:0/i-18:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0047199)Cardiolipin Biosynthesis CL(a-13:0/i-22:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0048486)Cardiolipin Biosynthesis CL(i-12:0/a-15:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0049775)Cardiolipin Biosynthesis CL(i-12:0/a-21:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0050422)Cardiolipin Biosynthesis CL(i-12:0/i-15:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0052040)Cardiolipin Biosynthesis CL(i-12:0/i-17:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0052686)Cardiolipin Biosynthesis CL(i-13:0/i-13:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0057214)Cardiolipin Biosynthesis CL(i-13:0/i-17:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0058515)Cardiolipin Biosynthesis CL(i-13:0/i-18:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0058845)Cardiolipin Biosynthesis CL(i-13:0/i-20:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0059510)Cardiolipin Biosynthesis CL(i-14:0/a-15:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0061162)Cardiolipin Biosynthesis CL(i-14:0/i-14:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0062300)Cardiolipin Biosynthesis CL(i-14:0/i-16:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0062963)Cardiolipin Biosynthesis CL(i-12:0/a-13:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0049454)Cardiolipin Biosynthesis CL(i-12:0/a-17:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0050099)Cardiolipin Biosynthesis CL(i-12:0/i-12:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0051070)Cardiolipin Biosynthesis CL(i-12:0/i-20:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0053655)Cardiolipin Biosynthesis CL(i-12:0/i-21:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0053979)Cardiolipin Biosynthesis CL(i-13:0/a-13:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0055270)Cardiolipin Biosynthesis CL(i-13:0/a-21:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0056242)Cardiolipin Biosynthesis CL(i-13:0/a-25:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0056568)Cardiolipin Biosynthesis CL(i-13:0/i-12:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0056893)Cardiolipin Biosynthesis CL(i-13:0/i-15:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0057870)Cardiolipin Biosynthesis CL(i-13:0/i-19:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0059186)Cardiolipin Biosynthesis CL(i-14:0/i-12:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0061655)Cardiolipin Biosynthesis CL(i-14:0/i-13:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0061977)Cardiolipin Biosynthesis CL(i-14:0/i-15:0/18:2(9Z,11Z)/i-14:0) (PathBank: SMP0062628)
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| Role | Not Available | 
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| Physical Properties | 
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| State | Solid | 
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| Experimental Molecular Properties | | Property | Value | Reference | 
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 | Melting Point | Not Available | Not Available |  | Boiling Point | Not Available | Not Available |  | Water Solubility | Not Available | Not Available |  | LogP | Not Available | Not Available | 
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| Experimental Chromatographic Properties | Not Available | 
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| Predicted Molecular Properties |  | 
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference | 
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 | Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. | 9.66 minutes | 32390414 |  | Predicted by Siyang on May 30, 2022 | 22.1839 minutes | 33406817 |  | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 2.83 minutes | 32390414 |  | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 4285.7 seconds | 40023050 |  | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 149.5 seconds | 40023050 |  | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 307.7 seconds | 40023050 |  | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 186.3 seconds | 40023050 |  | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 753.4 seconds | 40023050 |  | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 1277.1 seconds | 40023050 |  | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 1111.2 seconds | 40023050 |  | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 287.9 seconds | 40023050 |  | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 2237.6 seconds | 40023050 |  | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 1083.2 seconds | 40023050 |  | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 2113.7 seconds | 40023050 |  | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 861.8 seconds | 40023050 |  | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 611.2 seconds | 40023050 |  | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 146.6 seconds | 40023050 |  | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 186.5 seconds | 40023050 |  | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 9.3 seconds | 40023050 | 
 Predicted Kovats Retention IndicesNot Available | 
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|  | GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View | 
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 | Predicted GC-MS | Predicted GC-MS Spectrum - CDP-DG(18:2(9Z,11Z)/i-14:0) GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-13 | Wishart Lab | View Spectrum | 
 MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View | 
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 | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - CDP-DG(18:2(9Z,11Z)/i-14:0)  10V, Positive-QTOF | splash10-03di-0920000101-d1d44c78b6ab31743265 | 2019-02-22 | Wishart Lab | View Spectrum |  | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - CDP-DG(18:2(9Z,11Z)/i-14:0)  20V, Positive-QTOF | splash10-03di-1910000000-38bd59b773c164d7dc48 | 2019-02-22 | Wishart Lab | View Spectrum |  | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - CDP-DG(18:2(9Z,11Z)/i-14:0)  40V, Positive-QTOF | splash10-03di-3911000000-cb1d291375aff39dbe14 | 2019-02-22 | Wishart Lab | View Spectrum |  | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - CDP-DG(18:2(9Z,11Z)/i-14:0)  10V, Negative-QTOF | splash10-08i0-0690000203-282b2e3b3cd750a9c8be | 2019-02-23 | Wishart Lab | View Spectrum |  | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - CDP-DG(18:2(9Z,11Z)/i-14:0)  20V, Negative-QTOF | splash10-03fr-5692200201-0566d88f3eac0303f825 | 2019-02-23 | Wishart Lab | View Spectrum |  | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - CDP-DG(18:2(9Z,11Z)/i-14:0)  40V, Negative-QTOF | splash10-0bvi-5921000000-237f360336f8caa75016 | 2019-02-23 | Wishart Lab | View Spectrum |  | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - CDP-DG(18:2(9Z,11Z)/i-14:0)  10V, Positive-QTOF | splash10-0udi-6000010098-14bf646a8a41284d67a4 | 2021-09-23 | Wishart Lab | View Spectrum |  | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - CDP-DG(18:2(9Z,11Z)/i-14:0)  20V, Positive-QTOF | splash10-0a6u-8000000091-0de3310d6d09ea80c6f1 | 2021-09-23 | Wishart Lab | View Spectrum |  | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - CDP-DG(18:2(9Z,11Z)/i-14:0)  40V, Positive-QTOF | splash10-014i-0149300000-2e0d84fed45084ae9590 | 2021-09-23 | Wishart Lab | View Spectrum |  | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - CDP-DG(18:2(9Z,11Z)/i-14:0)  10V, Negative-QTOF | splash10-0002-0000000009-7545a02e20eced763869 | 2021-09-24 | Wishart Lab | View Spectrum |  | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - CDP-DG(18:2(9Z,11Z)/i-14:0)  20V, Negative-QTOF | splash10-004l-9060801502-e21a6dee7028d653c541 | 2021-09-24 | Wishart Lab | View Spectrum |  | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - CDP-DG(18:2(9Z,11Z)/i-14:0)  40V, Negative-QTOF | splash10-053r-4519402202-ae7e63535a6a165bf42d | 2021-09-24 | Wishart Lab | View Spectrum | 
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