Record Information |
---|
Version | 5.0 |
---|
Status | Expected but not Quantified |
---|
Creation Date | 2017-09-09 02:40:14 UTC |
---|
Update Date | 2022-11-30 19:25:54 UTC |
---|
HMDB ID | HMDB0114773 |
---|
Secondary Accession Numbers | None |
---|
Metabolite Identification |
---|
Common Name | PA(10:0/13:0) |
---|
Description | PA(10:0/13:0) is a phosphatidic acid. It is a glycerophospholipid in which a phosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidic acids can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PA(10:0/13:0), in particular, consists of one chain of capric acid at the C-1 position and one chain of tridecylic acid at the C-2 position. Phosphatidic acids are quite rare but are extremely important as intermediates in the biosynthesis of triacylglycerols and phospholipids. |
---|
Structure | [H][C@@](COC(=O)CCCCCCCCC)(COP(O)(O)=O)OC(=O)CCCCCCCCCCCC InChI=1S/C26H51O8P/c1-3-5-7-9-11-12-13-15-17-19-21-26(28)34-24(23-33-35(29,30)31)22-32-25(27)20-18-16-14-10-8-6-4-2/h24H,3-23H2,1-2H3,(H2,29,30,31)/t24-/m1/s1 |
---|
Synonyms | Value | Source |
---|
1-Decanoyl-2-tridecyloyl-sn-glycero-3-phosphate | HMDB | 1-Decanoyl-2-tridecyloyl-sn-phosphatidic acid | HMDB | PA(23:0) | HMDB | Phosphatidic acid(10:0/13:0) | HMDB | Phosphatidic acid(23:0) | HMDB | Phosphatidate(10:0/13:0) | HMDB | Phosphatidate(23:0) | HMDB | [(2R)-3-(Decanoyloxy)-2-(tridecanoyloxy)propoxy]phosphonate | HMDB | 1-decanoyl-2-tridecyloyl-sn-glycero-3-phosphate | SMPDB, HMDB | 1-decanoyl-2-tridecyloyl-sn-phosphatidic acid | SMPDB, HMDB | PA(23:0) | SMPDB, HMDB | Phosphatidic acid(10:0/13:0) | SMPDB, HMDB | Phosphatidic acid(23:0) | SMPDB, HMDB | Phosphatidate(10:0/13:0) | SMPDB, HMDB | PA(10:0/13:0) | SMPDB |
|
---|
Chemical Formula | C26H51O8P |
---|
Average Molecular Weight | 522.66 |
---|
Monoisotopic Molecular Weight | 522.3321556 |
---|
IUPAC Name | [(2R)-3-(decanoyloxy)-2-(tridecanoyloxy)propoxy]phosphonic acid |
---|
Traditional Name | (2R)-3-(decanoyloxy)-2-(tridecanoyloxy)propoxyphosphonic acid |
---|
CAS Registry Number | Not Available |
---|
SMILES | [H][C@@](COC(=O)CCCCCCCCC)(COP(O)(O)=O)OC(=O)CCCCCCCCCCCC |
---|
InChI Identifier | InChI=1S/C26H51O8P/c1-3-5-7-9-11-12-13-15-17-19-21-26(28)34-24(23-33-35(29,30)31)22-32-25(27)20-18-16-14-10-8-6-4-2/h24H,3-23H2,1-2H3,(H2,29,30,31)/t24-/m1/s1 |
---|
InChI Key | IVHOBDBVGVRNQI-XMMPIXPASA-N |
---|
Chemical Taxonomy |
---|
Description | Belongs to the class of organic compounds known as 1,2-diacylglycerol-3-phosphates. These are glycerol-3-phosphates in which the glycerol moiety is bonded to two aliphatic chains through ester linkages. |
---|
Kingdom | Organic compounds |
---|
Super Class | Lipids and lipid-like molecules |
---|
Class | Glycerophospholipids |
---|
Sub Class | Glycerophosphates |
---|
Direct Parent | 1,2-diacylglycerol-3-phosphates |
---|
Alternative Parents | |
---|
Substituents | - 1,2-diacylglycerol-3-phosphate
- Fatty acid ester
- Monoalkyl phosphate
- Dicarboxylic acid or derivatives
- Fatty acyl
- Alkyl phosphate
- Phosphoric acid ester
- Organic phosphoric acid derivative
- Carboxylic acid ester
- Carboxylic acid derivative
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Carbonyl group
- Organooxygen compound
- Aliphatic acyclic compound
|
---|
Molecular Framework | Aliphatic acyclic compounds |
---|
External Descriptors | Not Available |
---|
Ontology |
---|
Physiological effect | Not Available |
---|
Disposition | |
---|
Process | |
---|
Role | Not Available |
---|
Physical Properties |
---|
State | Solid |
---|
Experimental Molecular Properties | Property | Value | Reference |
---|
Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
|
---|
Experimental Chromatographic Properties | Not Available |
---|
Predicted Molecular Properties | |
---|
Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times UnderivatizedChromatographic Method | Retention Time | Reference |
---|
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 10.69 minutes | 32390414 | Predicted by Siyang on May 30, 2022 | 20.2878 minutes | 33406817 | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 2.48 minutes | 32390414 | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 3517.0 seconds | 40023050 | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 277.0 seconds | 40023050 | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 257.4 seconds | 40023050 | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 175.3 seconds | 40023050 | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 679.0 seconds | 40023050 | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 1077.7 seconds | 40023050 | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 1036.9 seconds | 40023050 | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 256.1 seconds | 40023050 | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 2082.3 seconds | 40023050 | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 757.3 seconds | 40023050 | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 1947.7 seconds | 40023050 | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 790.9 seconds | 40023050 | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 501.9 seconds | 40023050 | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 431.6 seconds | 40023050 | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 459.2 seconds | 40023050 | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 19.2 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
---|
PA(10:0/13:0),1TMS,isomer #1 | CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 3599.6 | Semi standard non polar | 33892256 | PA(10:0/13:0),1TMS,isomer #1 | CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 3319.4 | Standard non polar | 33892256 | PA(10:0/13:0),1TMS,isomer #1 | CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 4688.1 | Standard polar | 33892256 | PA(10:0/13:0),2TMS,isomer #1 | CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 3607.3 | Semi standard non polar | 33892256 | PA(10:0/13:0),2TMS,isomer #1 | CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 3353.5 | Standard non polar | 33892256 | PA(10:0/13:0),2TMS,isomer #1 | CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C | 4059.1 | Standard polar | 33892256 | PA(10:0/13:0),1TBDMS,isomer #1 | CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 3842.6 | Semi standard non polar | 33892256 | PA(10:0/13:0),1TBDMS,isomer #1 | CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 3471.6 | Standard non polar | 33892256 | PA(10:0/13:0),1TBDMS,isomer #1 | CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC)COP(=O)(O)O[Si](C)(C)C(C)(C)C | 4729.7 | Standard polar | 33892256 | PA(10:0/13:0),2TBDMS,isomer #1 | CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC)COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 4126.6 | Semi standard non polar | 33892256 | PA(10:0/13:0),2TBDMS,isomer #1 | CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC)COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 3594.3 | Standard non polar | 33892256 | PA(10:0/13:0),2TBDMS,isomer #1 | CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC)COP(=O)(O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 4173.7 | Standard polar | 33892256 |
|
---|
| MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
---|
Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 10V, Positive-QTOF | splash10-0aba-1925140000-77f36614537cffc5a6a4 | 2019-02-22 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 20V, Positive-QTOF | splash10-052b-1922100000-74cc477873f769966263 | 2019-02-22 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 40V, Positive-QTOF | splash10-06vj-2940200000-c0f73d10ec60f77bfd20 | 2019-02-22 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 10V, Negative-QTOF | splash10-0fmi-4923020000-a218b5fde44715bb837b | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 20V, Negative-QTOF | splash10-004i-9500000000-2a69348482bae84b7d7e | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 40V, Negative-QTOF | splash10-004i-9000000000-5321ce6ddbd6a2a6444f | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 10V, Negative-QTOF | splash10-00di-0000090000-30709640b1dba804391e | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 20V, Negative-QTOF | splash10-05fr-0339040000-e9dbc53e840445330341 | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 40V, Negative-QTOF | splash10-0229-1955010000-fd739b96094cfae55b70 | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 10V, Positive-QTOF | splash10-0ab9-0000090000-68a69efe144a98b69bd3 | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 20V, Positive-QTOF | splash10-00fr-0000590000-606cc8b009c527a9e2c4 | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 40V, Positive-QTOF | splash10-0kdi-0009620000-61770d199721abddb30f | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 10V, Positive-QTOF | splash10-0002-0000090000-c7cff9209a7b43f5a733 | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 20V, Positive-QTOF | splash10-0002-0000990000-99afb96d1170931fcc8c | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(10:0/13:0) 40V, Positive-QTOF | splash10-0002-0009230000-06a094fc0ec437960385 | 2021-09-25 | Wishart Lab | View Spectrum |
|
---|