| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2013-05-17 00:54:45 UTC |
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| Update Date | 2019-07-23 07:14:06 UTC |
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| HMDB ID | HMDB0060338 |
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| Secondary Accession Numbers | - HMDB0062280
- HMDB60338
- HMDB62280
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| Metabolite Identification |
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| Common Name | 11-cis-Retinyl palmitate |
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| Description | 11-cis-Retinyl palmitate, also known as 11-cis-retinyl hexadecanoate, belongs to the class of organic compounds known as wax monoesters. These are waxes bearing an ester group at exactly one position. 11-cis-Retinyl palmitate is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. |
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| Structure | CCCCCCCCCCCCCCCC(=O)OC\C=C(/C)\C=C/C=C(\C)/C=C/C1=C(C)CCCC1(C)C InChI=1S/C36H60O2/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-25-35(37)38-30-28-32(3)23-20-22-31(2)26-27-34-33(4)24-21-29-36(34,5)6/h20,22-23,26-28H,7-19,21,24-25,29-30H2,1-6H3/b23-20-,27-26+,31-22+,32-28+ |
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| Synonyms | | Value | Source |
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| 11-cis-Retinyl hexadecanoate | ChEBI | | 11-cis-Retinyl hexadecanoic acid | Generator | | 11-cis-Retinyl palmitic acid | Generator |
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| Chemical Formula | C36H60O2 |
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| Average Molecular Weight | 524.8604 |
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| Monoisotopic Molecular Weight | 524.459331164 |
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| IUPAC Name | (2E,4Z,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraen-1-yl hexadecanoate |
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| Traditional Name | 11-cis-retinyl palmitate |
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| CAS Registry Number | 51249-33-3 |
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| SMILES | CCCCCCCCCCCCCCCC(=O)OC\C=C(/C)\C=C/C=C(\C)/C=C/C1=C(C)CCCC1(C)C |
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| InChI Identifier | InChI=1S/C36H60O2/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-25-35(37)38-30-28-32(3)23-20-22-31(2)26-27-34-33(4)24-21-29-36(34,5)6/h20,22-23,26-28H,7-19,21,24-25,29-30H2,1-6H3/b23-20-,27-26+,31-22+,32-28+ |
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| InChI Key | VYGQUTWHTHXGQB-SXFSSFKVSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as wax monoesters. These are waxes bearing an ester group at exactly one position. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Fatty Acyls |
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| Sub Class | Fatty acid esters |
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| Direct Parent | Wax monoesters |
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| Alternative Parents | |
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| Substituents | - Wax monoester skeleton
- Retinoid skeleton
- Diterpenoid
- Fatty alcohol ester
- Carboxylic acid ester
- Monocarboxylic acid or derivatives
- Carboxylic acid derivative
- Organic oxygen compound
- Organic oxide
- Hydrocarbon derivative
- Organooxygen compound
- Carbonyl group
- Aliphatic homomonocyclic compound
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| Molecular Framework | Aliphatic homomonocyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Not Available |
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| Role | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter)). Predicted by Afia on May 17, 2022. | 7.97 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 45.609 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 0.96 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 5494.9 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 1410.3 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 523.3 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 811.1 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 994.8 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 1956.7 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 1628.0 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 124.7 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 4053.9 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 1233.5 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 3044.3 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1591.0 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 1013.1 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 953.9 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 1170.3 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 10.5 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatized |
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| GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted GC-MS | Predicted GC-MS Spectrum - 11-cis-Retinyl palmitate GC-MS (Non-derivatized) - 70eV, Positive | splash10-07vr-6590330000-c4a001ec8772bbd8b673 | 2017-09-20 | Wishart Lab | View Spectrum |
MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 11-cis-Retinyl palmitate 10V, Positive-QTOF | splash10-00p0-0491040000-c8a67fd69e259a36e93f | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 11-cis-Retinyl palmitate 20V, Positive-QTOF | splash10-00li-3960000000-70ca5c3efbf40f8f5ea0 | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 11-cis-Retinyl palmitate 40V, Positive-QTOF | splash10-001r-4910200000-144f35be46c93e2dabae | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 11-cis-Retinyl palmitate 10V, Negative-QTOF | splash10-00dr-0090060000-d5d329dcb92a78669524 | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 11-cis-Retinyl palmitate 20V, Negative-QTOF | splash10-0a4r-0090000000-70a2377fe27466902ed9 | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 11-cis-Retinyl palmitate 40V, Negative-QTOF | splash10-0a4u-2090000000-1ce0ef84e65a72b91a2c | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 11-cis-Retinyl palmitate 10V, Positive-QTOF | splash10-00or-0970350000-ae98e4da36c7fef49b01 | 2021-10-12 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 11-cis-Retinyl palmitate 20V, Positive-QTOF | splash10-00kr-1960010000-e463420790c3679b3761 | 2021-10-12 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 11-cis-Retinyl palmitate 40V, Positive-QTOF | splash10-01b9-3930000000-2209374e0a45d158da93 | 2021-10-12 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 11-cis-Retinyl palmitate 10V, Negative-QTOF | splash10-00di-0060090000-71bf924b1d2a2be5b8a8 | 2021-10-12 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 11-cis-Retinyl palmitate 20V, Negative-QTOF | splash10-0a4i-0090010000-91666b90277e61ac3969 | 2021-10-12 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 11-cis-Retinyl palmitate 40V, Negative-QTOF | splash10-0a4l-9870000000-8e1a1ac617c6db688b0b | 2021-10-12 | Wishart Lab | View Spectrum |
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