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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 23:58:42 UTC

Update Date

2022-03-07 02:55:51 UTC

HMDB ID

HMDB0038646

Secondary Accession Numbers

HMDB38646

Metabolite Identification

Common Name

(8E)-Piperamide-C9:1

Description

(8E)-Piperamide-C9:1 belongs to the class of organic compounds known as benzodioxoles. These are organic compounds containing a benzene ring fused to either isomers of dioxole. Dioxole is a five-membered unsaturated ring of two oxygen atoms and three carbon atoms (8E)-Piperamide-C9:1 has been detected, but not quantified in, herbs and spices. This could make (8E)-piperamide-C9:1 a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on (8E)-Piperamide-C9:1.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0038646
     RDKit          3D
(8E)-Piperamide-C9:1
 51 53  0  0  0  0  0  0  0  0999 V2000
    3.8313    0.4325   -1.4057 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3696    0.3880   -0.2487 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7715    1.1089    0.8846 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4372    1.7372    0.5944 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3978    0.7241    0.2179 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0527    1.3901   -0.0711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9274    0.3183   -0.4378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3303    0.8959   -0.7600 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8717    1.5960    0.4075 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1244    1.5173    0.7497 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1834    0.7995    0.1021 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2497    0.4011   -1.1964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2848   -0.3719   -1.6558 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2924   -0.7658   -0.8119 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2708   -0.3852    0.5091 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2282    0.3865    0.9533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4101   -0.9131    1.1580 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8815   -1.9374    0.3041 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4505   -1.5424   -1.0069 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5532   -0.3833   -0.1372 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.3171   -0.5662    1.0721 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7454   -0.7551    0.6752 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6640   -1.2625   -0.7413 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2210   -1.1232   -1.1770 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5932    0.3739    1.7217 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4614    1.8778    1.3023 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0921    2.3425    1.4792 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5582    2.5193   -0.2141 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7266    0.0883   -0.5981 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2152    0.0805    1.1203 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2120    2.1174   -0.9007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2133    1.9894    0.8105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5857   -0.1293   -1.3935 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.1776    2.2321    1.0376 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4139    2.1018    1.6712 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4880    0.7599   -1.9088 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3167   -0.6804   -2.6944 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2203    0.6858    2.0198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9728   -2.0749    0.3483 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3740   -2.8740    0.6275 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9700   -1.4313    1.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2564    0.3267    1.7264 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3375    0.2012    0.7196 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2803   -1.4814    1.3218 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2952   -0.6220   -1.3882 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0163   -2.3019   -0.7804 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8179   -2.1705   -1.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1569   -0.5927   -2.1561 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
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  9 10  2  0
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 11 12  2  0
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 17 18  1  0
 18 19  1  0
  2 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
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 16 11  1  0
 24 20  1  0
 19 14  1  0
  3 25  1  0
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  4 27  1  0
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M  END


  Mrv0541 05061310342D          

 24 26  0  0  0  0            999 V2000
    0.0000   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1800   -2.3080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.8579   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.8579   -5.7750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -3.3000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3149   -6.9945    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4710   -6.3270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  5  3  1  0  0  0  0
  6  4  1  0  0  0  0
  8  7  1  0  0  0  0
  9  5  2  0  0  0  0
 10  6  1  0  0  0  0
 12 11  2  0  0  0  0
 13  7  1  0  0  0  0
 14  8  1  0  0  0  0
 17  9  1  0  0  0  0
 17 11  1  0  0  0  0
 17 15  2  0  0  0  0
 18 12  1  0  0  0  0
 19 15  1  0  0  0  0
 19 18  2  0  0  0  0
 20 10  1  0  0  0  0
 21 13  1  0  0  0  0
 21 14  1  0  0  0  0
 21 20  1  0  0  0  0
 22 20  2  0  0  0  0
 23 16  1  0  0  0  0
 23 18  1  0  0  0  0
 24 16  1  0  0  0  0
 24 19  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0038646

> <DATABASE_NAME>
hmdb

> <SMILES>
O=C(CCCCCC\C=C/C1=CC2=C(OCO2)C=C1)N1CCCC1

> <INCHI_IDENTIFIER>
InChI=1S/C20H27NO3/c22-20(21-13-7-8-14-21)10-6-4-2-1-3-5-9-17-11-12-18-19(15-17)24-16-23-18/h5,9,11-12,15H,1-4,6-8,10,13-14,16H2/b9-5-

> <INCHI_KEY>
VBHDFZGBKBFFDM-UITAMQMPSA-N

> <FORMULA>
C20H27NO3

> <MOLECULAR_WEIGHT>
329.4333

> <EXACT_MASS>
329.199093735

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_AVERAGE_POLARIZABILITY>
38.51994547792033

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(8Z)-9-(2H-1,3-benzodioxol-5-yl)-1-(pyrrolidin-1-yl)non-8-en-1-one

> <ALOGPS_LOGP>
4.71

> <JCHEM_LOGP>
4.113193555666667

> <ALOGPS_LOGS>
-4.52

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
0.12475066302839577

> <JCHEM_POLAR_SURFACE_AREA>
38.77

> <JCHEM_REFRACTIVITY>
95.6127

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.00e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(8Z)-9-(2H-1,3-benzodioxol-5-yl)-1-(pyrrolidin-1-yl)non-8-en-1-one

> <JCHEM_VEBER_RULE>
1

$$$$

HMDB0038646
     RDKit          3D
(8E)-Piperamide-C9:1
 51 53  0  0  0  0  0  0  0  0999 V2000
    3.8313    0.4325   -1.4057 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3696    0.3880   -0.2487 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7715    1.1089    0.8846 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4372    1.7372    0.5944 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3978    0.7241    0.2179 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0527    1.3901   -0.0711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9274    0.3183   -0.4378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3303    0.8959   -0.7600 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8717    1.5960    0.4075 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1244    1.5173    0.7497 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1834    0.7995    0.1021 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2497    0.4011   -1.1964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2848   -0.3719   -1.6558 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2924   -0.7658   -0.8119 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2708   -0.3852    0.5091 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2282    0.3865    0.9533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4101   -0.9131    1.1580 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8815   -1.9374    0.3041 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4505   -1.5424   -1.0069 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5532   -0.3833   -0.1372 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.3171   -0.5662    1.0721 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7454   -0.7551    0.6752 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6640   -1.2625   -0.7413 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2210   -1.1232   -1.1770 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5932    0.3739    1.7217 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4614    1.8778    1.3023 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0921    2.3425    1.4792 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5582    2.5193   -0.2141 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.2152    0.0805    1.1203 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2120    2.1174   -0.9007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2133    1.9894    0.8105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5857   -0.1293   -1.3935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9913   -0.4882    0.3030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2100    1.5620   -1.6012 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.3167   -0.6804   -2.6944 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2203    0.6858    2.0198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9728   -2.0749    0.3483 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3740   -2.8740    0.6275 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9700   -1.4313    1.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2564    0.3267    1.7264 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3375    0.2012    0.7196 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2803   -1.4814    1.3218 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2952   -0.6220   -1.3882 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0163   -2.3019   -0.7804 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8179   -2.1705   -1.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1569   -0.5927   -2.1561 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
  2 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 16 11  1  0
 24 20  1  0
 19 14  1  0
  3 25  1  0
  3 26  1  0
  4 27  1  0
  4 28  1  0
  5 29  1  0
  5 30  1  0
  6 31  1  0
  6 32  1  0
  7 33  1  0
  7 34  1  0
  8 35  1  0
  8 36  1  0
  9 37  1  0
 10 38  1  0
 12 39  1  0
 13 40  1  0
 16 41  1  0
 18 42  1  0
 18 43  1  0
 21 44  1  0
 21 45  1  0
 22 46  1  0
 22 47  1  0
 23 48  1  0
 23 49  1  0
 24 50  1  0
 24 51  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       0.000  -6.160   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.667  -6.160   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667  -6.160   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -4.001  -6.930   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -9.669  -4.308   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -10.439  -5.642   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -5.335  -6.160   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.667  -9.240   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.667 -10.780   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -8.163  -4.628   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -9.409  -6.786   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.335  -9.240   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.853 -13.217   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.001  -8.470   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.001 -11.550   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.335 -10.780   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -6.668  -6.930   0.000  0.00  0.00           C+0
HETATM   21  N   UNK     0      -8.002  -6.160   0.000  0.00  0.00           N+0
HETATM   22  O   UNK     0      -6.668  -8.470   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       4.321 -13.056   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0       6.479 -11.810   0.000  0.00  0.00           O+0
CONECT    1    2    3                                                       
CONECT    2    1    4                                                       
CONECT    3    1    5                                                       
CONECT    4    2    6                                                       
CONECT    5    3    9                                                       
CONECT    6    4   10                                                       
CONECT    7    8   13                                                       
CONECT    8    7   14                                                       
CONECT    9    5   17                                                       
CONECT   10    6   20                                                       
CONECT   11   12   17                                                       
CONECT   12   11   18                                                       
CONECT   13    7   21                                                       
CONECT   14    8   21                                                       
CONECT   15   17   19                                                       
CONECT   16   23   24                                                       
CONECT   17    9   11   15                                                  
CONECT   18   12   19   23                                                  
CONECT   19   15   18   24                                                  
CONECT   20   10   21   22                                                  
CONECT   21   13   14   20                                                  
CONECT   22   20                                                            
CONECT   23   16   18                                                       
CONECT   24   16   19                                                       
MASTER        0    0    0    0    0    0    0    0   24    0   52    0
END

COMPND    HMDB0038646
HETATM    1  O1  UNL     1       3.831   0.432  -1.406  1.00  0.00           O  
HETATM    2  C1  UNL     1       4.370   0.388  -0.249  1.00  0.00           C  
HETATM    3  C2  UNL     1       3.772   1.109   0.885  1.00  0.00           C  
HETATM    4  C3  UNL     1       2.437   1.737   0.594  1.00  0.00           C  
HETATM    5  C4  UNL     1       1.398   0.724   0.218  1.00  0.00           C  
HETATM    6  C5  UNL     1       0.053   1.390  -0.071  1.00  0.00           C  
HETATM    7  C6  UNL     1      -0.927   0.318  -0.438  1.00  0.00           C  
HETATM    8  C7  UNL     1      -2.330   0.896  -0.760  1.00  0.00           C  
HETATM    9  C8  UNL     1      -2.872   1.596   0.408  1.00  0.00           C  
HETATM   10  C9  UNL     1      -4.124   1.517   0.750  1.00  0.00           C  
HETATM   11  C10 UNL     1      -5.183   0.800   0.102  1.00  0.00           C  
HETATM   12  C11 UNL     1      -5.250   0.401  -1.196  1.00  0.00           C  
HETATM   13  C12 UNL     1      -6.285  -0.372  -1.656  1.00  0.00           C  
HETATM   14  C13 UNL     1      -7.292  -0.766  -0.812  1.00  0.00           C  
HETATM   15  C14 UNL     1      -7.271  -0.385   0.509  1.00  0.00           C  
HETATM   16  C15 UNL     1      -6.228   0.386   0.953  1.00  0.00           C  
HETATM   17  O2  UNL     1      -8.410  -0.913   1.158  1.00  0.00           O  
HETATM   18  C16 UNL     1      -8.882  -1.937   0.304  1.00  0.00           C  
HETATM   19  O3  UNL     1      -8.451  -1.542  -1.007  1.00  0.00           O  
HETATM   20  N1  UNL     1       5.553  -0.383  -0.137  1.00  0.00           N  
HETATM   21  C17 UNL     1       6.317  -0.566   1.072  1.00  0.00           C  
HETATM   22  C18 UNL     1       7.745  -0.755   0.675  1.00  0.00           C  
HETATM   23  C19 UNL     1       7.664  -1.262  -0.741  1.00  0.00           C  
HETATM   24  C20 UNL     1       6.221  -1.123  -1.177  1.00  0.00           C  
HETATM   25  H1  UNL     1       3.593   0.374   1.722  1.00  0.00           H  
HETATM   26  H2  UNL     1       4.461   1.878   1.302  1.00  0.00           H  
HETATM   27  H3  UNL     1       2.092   2.343   1.479  1.00  0.00           H  
HETATM   28  H4  UNL     1       2.558   2.519  -0.214  1.00  0.00           H  
HETATM   29  H5  UNL     1       1.727   0.088  -0.598  1.00  0.00           H  
HETATM   30  H6  UNL     1       1.215   0.081   1.120  1.00  0.00           H  
HETATM   31  H7  UNL     1       0.212   2.117  -0.901  1.00  0.00           H  
HETATM   32  H8  UNL     1      -0.213   1.989   0.810  1.00  0.00           H  
HETATM   33  H9  UNL     1      -0.586  -0.129  -1.394  1.00  0.00           H  
HETATM   34  H10 UNL     1      -0.991  -0.488   0.303  1.00  0.00           H  
HETATM   35  H11 UNL     1      -2.210   1.562  -1.601  1.00  0.00           H  
HETATM   36  H12 UNL     1      -2.881  -0.066  -0.961  1.00  0.00           H  
HETATM   37  H13 UNL     1      -2.178   2.232   1.038  1.00  0.00           H  
HETATM   38  H14 UNL     1      -4.414   2.102   1.671  1.00  0.00           H  
HETATM   39  H15 UNL     1      -4.488   0.760  -1.909  1.00  0.00           H  
HETATM   40  H16 UNL     1      -6.317  -0.680  -2.694  1.00  0.00           H  
HETATM   41  H17 UNL     1      -6.220   0.686   2.020  1.00  0.00           H  
HETATM   42  H18 UNL     1      -9.973  -2.075   0.348  1.00  0.00           H  
HETATM   43  H19 UNL     1      -8.374  -2.874   0.628  1.00  0.00           H  
HETATM   44  H20 UNL     1       5.970  -1.431   1.674  1.00  0.00           H  
HETATM   45  H21 UNL     1       6.256   0.327   1.726  1.00  0.00           H  
HETATM   46  H22 UNL     1       8.338   0.201   0.720  1.00  0.00           H  
HETATM   47  H23 UNL     1       8.280  -1.481   1.322  1.00  0.00           H  
HETATM   48  H24 UNL     1       8.295  -0.622  -1.388  1.00  0.00           H  
HETATM   49  H25 UNL     1       8.016  -2.302  -0.780  1.00  0.00           H  
HETATM   50  H26 UNL     1       5.818  -2.170  -1.265  1.00  0.00           H  
HETATM   51  H27 UNL     1       6.157  -0.593  -2.156  1.00  0.00           H  
CONECT    1    2    2
CONECT    2    3   20
CONECT    3    4   25   26
CONECT    4    5   27   28
CONECT    5    6   29   30
CONECT    6    7   31   32
CONECT    7    8   33   34
CONECT    8    9   35   36
CONECT    9   10   10   37
CONECT   10   11   38
CONECT   11   12   12   16
CONECT   12   13   39
CONECT   13   14   14   40
CONECT   14   15   19
CONECT   15   16   16   17
CONECT   16   41
CONECT   17   18
CONECT   18   19   42   43
CONECT   20   21   24
CONECT   21   22   44   45
CONECT   22   23   46   47
CONECT   23   24   48   49
CONECT   24   50   51
END

HMDB0038646
     RDKit          3D
(8E)-Piperamide-C9:1
 51 53  0  0  0  0  0  0  0  0999 V2000
    3.8313    0.4325   -1.4057 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3696    0.3880   -0.2487 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7715    1.1089    0.8846 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4372    1.7372    0.5944 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3978    0.7241    0.2179 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0527    1.3901   -0.0711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9274    0.3183   -0.4378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3303    0.8959   -0.7600 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8717    1.5960    0.4075 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1244    1.5173    0.7497 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1834    0.7995    0.1021 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2497    0.4011   -1.1964 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2848   -0.3719   -1.6558 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2924   -0.7658   -0.8119 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2708   -0.3852    0.5091 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2282    0.3865    0.9533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4101   -0.9131    1.1580 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8815   -1.9374    0.3041 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4505   -1.5424   -1.0069 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5532   -0.3833   -0.1372 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.3171   -0.5662    1.0721 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7454   -0.7551    0.6752 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6640   -1.2625   -0.7413 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2210   -1.1232   -1.1770 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5932    0.3739    1.7217 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4614    1.8778    1.3023 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0921    2.3425    1.4792 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5582    2.5193   -0.2141 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7266    0.0883   -0.5981 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2152    0.0805    1.1203 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2120    2.1174   -0.9007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2133    1.9894    0.8105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5857   -0.1293   -1.3935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9913   -0.4882    0.3030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2100    1.5620   -1.6012 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8811   -0.0663   -0.9609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1776    2.2321    1.0376 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4139    2.1018    1.6712 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4880    0.7599   -1.9088 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3167   -0.6804   -2.6944 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2203    0.6858    2.0198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9728   -2.0749    0.3483 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3740   -2.8740    0.6275 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9700   -1.4313    1.6744 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2564    0.3267    1.7264 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3375    0.2012    0.7196 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2803   -1.4814    1.3218 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2952   -0.6220   -1.3882 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0163   -2.3019   -0.7804 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8179   -2.1705   -1.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1569   -0.5927   -2.1561 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
  2 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 16 11  1  0
 24 20  1  0
 19 14  1  0
  3 25  1  0
  3 26  1  0
  4 27  1  0
  4 28  1  0
  5 29  1  0
  5 30  1  0
  6 31  1  0
  6 32  1  0
  7 33  1  0
  7 34  1  0
  8 35  1  0
  8 36  1  0
  9 37  1  0
 10 38  1  0
 12 39  1  0
 13 40  1  0
 16 41  1  0
 18 42  1  0
 18 43  1  0
 21 44  1  0
 21 45  1  0
 22 46  1  0
 22 47  1  0
 23 48  1  0
 23 49  1  0
 24 50  1  0
 24 51  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
1-[9-(1,3-Benzodioxol-5-yl)-1-oxo-8-nonenyl]pyrrolidine, 9ci	HMDB
1-[9-(3,4-Methylenedioxyphenyl)-8-nonenoyl]pyrrolidine	HMDB
9-(3,4-Methylenedioxyphenyl)-8-nonenoic acid pyrrolidide	HMDB
Piperamide-C9:1 (8E)	HMDB
Tricholein	HMDB

Chemical Formula

C₂₀H₂₇NO₃

Average Molecular Weight

329.4333

Monoisotopic Molecular Weight

329.199093735

IUPAC Name

(8Z)-9-(2H-1,3-benzodioxol-5-yl)-1-(pyrrolidin-1-yl)non-8-en-1-one

Traditional Name

(8Z)-9-(2H-1,3-benzodioxol-5-yl)-1-(pyrrolidin-1-yl)non-8-en-1-one

CAS Registry Number

62510-52-5

SMILES

O=C(CCCCCC\C=C/C1=CC2=C(OCO2)C=C1)N1CCCC1

InChI Identifier

InChI=1S/C20H27NO3/c22-20(21-13-7-8-14-21)10-6-4-2-1-3-5-9-17-11-12-18-19(15-17)24-16-23-18/h5,9,11-12,15H,1-4,6-8,10,13-14,16H2/b9-5-

InChI Key

VBHDFZGBKBFFDM-UITAMQMPSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as benzodioxoles. These are organic compounds containing a benzene ring fused to either isomers of dioxole. Dioxole is a five-membered unsaturated ring of two oxygen atoms and three carbon atoms.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzodioxoles

Sub Class

Not Available

Direct Parent

Benzodioxoles

Alternative Parents

Substituents

Benzodioxole
N-acylpyrrolidine
Styrene
Benzenoid
Pyrrolidine
Tertiary carboxylic acid amide
Carboxamide group
Acetal
Carboxylic acid derivative
Oxacycle
Azacycle
Organooxygen compound
Organonitrogen compound
Organopnictogen compound
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organic nitrogen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Membrane (HMDB: HMDB0038646)
Cell membrane (HMDB: HMDB0038646)

Route of exposure

Enteral

Ingestion (HMDB: HMDB0038646)

Source

Exogenous

Exogenous (HMDB: HMDB0038646)

Food

Food (HMDB: HMDB0038646)

Herb and spice

Herbs and Spices (FooDB: FOOD00866)

Endogenous

Plant

Plant (HMDB: HMDB0038646)

Process

Not Available

Role

Biological role

Nutrient (HMDB: HMDB0038646)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.01 g/L	ALOGPS
logP	4.71	ALOGPS
logP	4.11	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Basic)	0.12	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	38.77 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	95.61 m³·mol⁻¹	ChemAxon
Polarizability	38.52 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	181.269	31661259
DarkChem	[M-H]-	178.043	31661259
DeepCCS	[M+H]+	182.143	30932474
DeepCCS	[M-H]-	179.785	30932474
DeepCCS	[M-2H]-	212.812	30932474
DeepCCS	[M+Na]+	188.418	30932474
AllCCS	[M+H]+	183.3	32859911
AllCCS	[M+H-H2O]+	180.2	32859911
AllCCS	[M+NH4]+	186.3	32859911
AllCCS	[M+Na]+	187.1	32859911
AllCCS	[M-H]-	186.5	32859911
AllCCS	[M+Na-2H]-	187.0	32859911
AllCCS	[M+HCOO]-	187.8	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	8.66 minutes	32390414
Predicted by Siyang on May 30, 2022	17.7092 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	1.16 minutes	32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid	31.3 seconds	40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	2724.9 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	430.0 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	230.8 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	227.4 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	470.9 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	760.8 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	778.4 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	144.0 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1633.4 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	542.7 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1693.2 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	521.9 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	446.9 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	319.7 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	313.4 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	7.9 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(8E)-Piperamide-C9:1	O=C(CCCCCC\C=C/C1=CC2=C(OCO2)C=C1)N1CCCC1	3764.7	Standard polar	33892256
(8E)-Piperamide-C9:1	O=C(CCCCCC\C=C/C1=CC2=C(OCO2)C=C1)N1CCCC1	2896.6	Standard non polar	33892256
(8E)-Piperamide-C9:1	O=C(CCCCCC\C=C/C1=CC2=C(OCO2)C=C1)N1CCCC1	3113.0	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - (8E)-Piperamide-C9:1 GC-MS (Non-derivatized) - 70eV, Positive	splash10-06dj-5940000000-758f56fa908296d48407	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (8E)-Piperamide-C9:1 GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (8E)-Piperamide-C9:1 10V, Positive-QTOF	splash10-001i-3119000000-929de533757a1cd72225	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (8E)-Piperamide-C9:1 20V, Positive-QTOF	splash10-00e9-9854000000-940d4d28e77b424ac4cd	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (8E)-Piperamide-C9:1 40V, Positive-QTOF	splash10-00di-9210000000-841a776e9c4cc543a1a4	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (8E)-Piperamide-C9:1 10V, Negative-QTOF	splash10-004i-0019000000-9d54ba8783f68066746d	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (8E)-Piperamide-C9:1 20V, Negative-QTOF	splash10-00fr-9147000000-9b67609da8c740fab8d4	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (8E)-Piperamide-C9:1 40V, Negative-QTOF	splash10-00di-9010000000-0cd4fdfeb50216a6208f	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (8E)-Piperamide-C9:1 10V, Positive-QTOF	splash10-001i-1039000000-e3ba41641f4f26b0f839	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (8E)-Piperamide-C9:1 20V, Positive-QTOF	splash10-00e9-9143000000-6f32fa32343b83496d60	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (8E)-Piperamide-C9:1 40V, Positive-QTOF	splash10-00di-9410000000-01dff7f1a3667a5e9048	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (8E)-Piperamide-C9:1 10V, Negative-QTOF	splash10-004i-0009000000-0f5638ae26e5b35ccb4f	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (8E)-Piperamide-C9:1 20V, Negative-QTOF	splash10-004i-1139000000-682a296ecda8eee2fc60	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (8E)-Piperamide-C9:1 40V, Negative-QTOF	splash10-00bc-9357000000-080a65fe9ede10180af5	2021-09-22	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB018041

KNApSAcK ID

C00055284

Chemspider ID

30777278

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

131752412

PDB ID

Not Available

ChEBI ID

174439

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

Showing metabocard for (8E)-Piperamide-C9:1 (HMDB0038646)

MOL for HMDB0038646 ((8E)-Piperamide-C9:1)

3D MOL for HMDB0038646 ((8E)-Piperamide-C9:1)

3D SDF for HMDB0038646 ((8E)-Piperamide-C9:1)

3D-SDF for HMDB0038646 ((8E)-Piperamide-C9:1)

PDB for HMDB0038646 ((8E)-Piperamide-C9:1)

3D PDB for HMDB0038646 ((8E)-Piperamide-C9:1)

SMILES for HMDB0038646 ((8E)-Piperamide-C9:1)

INCHI for HMDB0038646 ((8E)-Piperamide-C9:1)

Structure for HMDB0038646 ((8E)-Piperamide-C9:1)

3D Structure for HMDB0038646 ((8E)-Piperamide-C9:1)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra

MS/MS Spectra