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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 23:25:23 UTC
Update Date2022-03-07 02:55:38 UTC
HMDB IDHMDB0038140
Secondary Accession Numbers
  • HMDB38140
Metabolite Identification
Common NameSantene
DescriptionSantene belongs to the class of organic compounds known as branched unsaturated hydrocarbons. These are hydrocarbons that contains one or more unsaturated carbon atoms, and an aliphatic branch. Santene is found, on average, in the highest concentration within parsleys (Petroselinum crispum). Santene has also been detected, but not quantified in, cornmints (Mentha arvensis) and rosemaries (Rosmarinus officinalis). This could make santene a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on Santene.
Structure
Data?1563863145
Synonyms
ValueSource
2,3-Dimethyl-2-norborneneHMDB
2,3-Dimethyl-bicyclo(2.2.1)hept-2-eneHMDB
2,3-Dimethyl-bicyclo[2.2.1]hept-2-eneHMDB
2,3-dimethylbicyclo(2.2.1)Hept-2-eneHMDB
SantenHMDB
Chemical FormulaC9H14
Average Molecular Weight122.2075
Monoisotopic Molecular Weight122.109550448
IUPAC Name2,3-dimethylbicyclo[2.2.1]hept-2-ene
Traditional Name2,3-dimethylbicyclo[2.2.1]hept-2-ene
CAS Registry Number529-16-8
SMILES
CC1=C(C)C2CCC1C2
InChI Identifier
InChI=1S/C9H14/c1-6-7(2)9-4-3-8(6)5-9/h8-9H,3-5H2,1-2H3
InChI KeyLSIXBBPOJBJQHN-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as branched unsaturated hydrocarbons. These are hydrocarbons that contains one or more unsaturated carbon atoms, and an aliphatic branch.
KingdomOrganic compounds
Super ClassHydrocarbons
ClassUnsaturated hydrocarbons
Sub ClassBranched unsaturated hydrocarbons
Direct ParentBranched unsaturated hydrocarbons
Alternative Parents
Substituents
  • Branched unsaturated hydrocarbon
  • Polycyclic hydrocarbon
  • Cyclic olefin
  • Unsaturated aliphatic hydrocarbon
  • Olefin
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling Point140.00 to 141.00 °C. @ 760.00 mm HgThe Good Scents Company Information System
Water Solubility12.23 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP3.820 (est)The Good Scents Company Information System
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility1.12 g/LALOGPS
logP3.35ALOGPS
logP2.46ChemAxon
logS-2ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity39.98 m³·mol⁻¹ChemAxon
Polarizability15.44 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+127.88431661259
DarkChem[M-H]-122.22331661259
DeepCCS[M+H]+135.45230932474
DeepCCS[M-H]-133.18630932474
DeepCCS[M-2H]-168.93630932474
DeepCCS[M+Na]+143.75130932474
AllCCS[M+H]+124.632859911
AllCCS[M+H-H2O]+119.932859911
AllCCS[M+NH4]+129.032859911
AllCCS[M+Na]+130.332859911
AllCCS[M-H]-128.232859911
AllCCS[M+Na-2H]-130.032859911
AllCCS[M+HCOO]-132.032859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.4.35 minutes32390414
Predicted by Siyang on May 30, 202215.9942 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20223.2 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2021.2 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid625.8 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid226.2 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid368.8 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid299.9 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid545.8 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid710.5 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)214.3 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1188.2 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid437.9 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1225.1 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid397.8 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid384.8 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate521.2 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA561.9 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water67.5 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
SanteneCC1=C(C)C2CCC1C2999.5Standard polar33892256
SanteneCC1=C(C)C2CCC1C2884.8Standard non polar33892256
SanteneCC1=C(C)C2CCC1C2873.2Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Santene GC-MS (Non-derivatized) - 70eV, Positivesplash10-00kf-9200000000-3db52d1b9bebf9a1840d2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Santene GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Santene 10V, Positive-QTOFsplash10-00di-0900000000-bd656727c03f410c32862016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Santene 20V, Positive-QTOFsplash10-00di-3900000000-066aad55e854817b39822016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Santene 40V, Positive-QTOFsplash10-0ldi-9000000000-9c79884d39c433fd66e92016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Santene 10V, Negative-QTOFsplash10-00di-0900000000-6f5f19f3b9ed19ddb7692016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Santene 20V, Negative-QTOFsplash10-00di-0900000000-6f5f19f3b9ed19ddb7692016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Santene 40V, Negative-QTOFsplash10-00di-5900000000-9c971efd5fa1d3a8077b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Santene 10V, Negative-QTOFsplash10-00di-0900000000-56411623dae7f87912032021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Santene 20V, Negative-QTOFsplash10-00di-0900000000-56411623dae7f87912032021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Santene 40V, Negative-QTOFsplash10-00xr-0900000000-d4ab66b6840f6e4215bc2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Santene 10V, Positive-QTOFsplash10-05tb-9300000000-75865e6488365517d2b12021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Santene 20V, Positive-QTOFsplash10-0002-9100000000-6c9ecf2398aa56df71242021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Santene 40V, Positive-QTOFsplash10-0uy4-9000000000-a2e36e9d78fa263360c52021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB017368
KNApSAcK IDC00037789
Chemspider ID10269
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10720
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1453141
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .