Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 21:07:34 UTC
Update Date2023-02-21 17:25:01 UTC
HMDB IDHMDB0036057
Secondary Accession Numbers
  • HMDB36057
Metabolite Identification
Common Name1H-Pyrrole-2-carboxaldehyde
Description1H-Pyrrole-2-carboxaldehyde, also known as alpha-pyrrolaldehyde or 2-carboxaldehyde-1H-pyrrole, belongs to the class of organic compounds known as aryl-aldehydes. Aryl-aldehydes are compounds containing an aldehyde group directly attached to an aromatic ring. 1H-Pyrrole-2-carboxaldehyde is an ethereal tasting compound. 1H-Pyrrole-2-carboxaldehyde is found, on average, in the highest concentration within beer. 1H-Pyrrole-2-carboxaldehyde has also been detected, but not quantified in, several different foods, such as teas (Camellia sinensis), blackberries (Rubus), asparagus (Asparagus officinalis), pulses, and evergreen blackberries (Rubus laciniatus). This could make 1H-pyrrole-2-carboxaldehyde a potential biomarker for the consumption of these foods. Based on a literature review a significant number of articles have been published on 1H-Pyrrole-2-carboxaldehyde.
Structure
Data?1677000301
Synonyms
ValueSource
1(H)-Pyrrole carboxaldehydeChEBI
1-Pyrrole-2-carboxaldehydeChEBI
1H-Pyrrole-2-carboxyaldehydeChEBI
2-Carboxaldehyde-1H-pyrroleChEBI
2-FormylpyrroleChEBI
2-PyrrolaldehydeChEBI
2-PyrrolcarbaldehydeChEBI
2-Pyrrole aldehydeChEBI
2-PyrrolecarbaldehydeChEBI
2-PyrrolecarboxaldehydeChEBI
2-PyrrolylcarboxaldehydeChEBI
alpha-PyrrolaldehydeChEBI
Pyrrol-2-carboxaldehydeChEBI
Pyrrole-2-aldehydeChEBI
Pyrrole-2-carbaldehydeChEBI
a-PyrrolaldehydeGenerator
Α-pyrrolaldehydeGenerator
1( H)-Pyrrole carboxaldehydeHMDB
1H-Pyrrole-2-carbaldehydeHMDB
Pyrrole-2-carboxaldehydeHMDB, MeSH
Pyrrole-2-carboxaldehyde (8ci)HMDB
1H-Pyrrole-2-carboxaldehydeChEBI
Chemical FormulaC5H5NO
Average Molecular Weight95.0993
Monoisotopic Molecular Weight95.037113787
IUPAC Name1H-pyrrole-2-carbaldehyde
Traditional Namepyrrole-2-carboxaldehyde
CAS Registry Number1003-29-8
SMILES
O=CC1=CC=CN1
InChI Identifier
InChI=1S/C5H5NO/c7-4-5-2-1-3-6-5/h1-4,6H
InChI KeyZSKGQVFRTSEPJT-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as aryl-aldehydes. Aryl-aldehydes are compounds containing an aldehyde group directly attached to an aromatic ring.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbonyl compounds
Direct ParentAryl-aldehydes
Alternative Parents
Substituents
  • Aryl-aldehyde
  • Substituted pyrrole
  • Heteroaromatic compound
  • Pyrrole
  • Azacycle
  • Organoheterocyclic compound
  • Organic nitrogen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External Descriptors
Ontology
Physiological effect
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point50 - 51 °CNot Available
Boiling Point216.00 to 218.00 °C. @ 760.00 mm HgThe Good Scents Company Information System
Water Solubility34300 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP0.64Not Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility304 g/LALOGPS
logP0.52ALOGPS
logP0.69ChemAxon
logS0.5ALOGPS
pKa (Strongest Acidic)14.21ChemAxon
pKa (Strongest Basic)-7.5ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area32.86 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity27.28 m³·mol⁻¹ChemAxon
Polarizability9.3 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+115.02531661259
DarkChem[M-H]-110.46831661259
DeepCCS[M+H]+119.19330932474
DeepCCS[M-H]-117.16430932474
DeepCCS[M-2H]-153.06230932474
DeepCCS[M+Na]+127.60430932474
AllCCS[M+H]+119.432859911
AllCCS[M+H-H2O]+114.332859911
AllCCS[M+NH4]+124.232859911
AllCCS[M+Na]+125.632859911
AllCCS[M-H]-116.432859911
AllCCS[M+Na-2H]-119.432859911
AllCCS[M+HCOO]-122.732859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.2.49 minutes32390414
Predicted by Siyang on May 30, 202211.8288 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20223.25 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1348.2 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid442.9 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid138.9 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid301.5 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid208.1 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid408.9 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid480.5 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)362.1 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid944.3 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid263.1 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid969.1 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid344.3 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid326.9 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate554.9 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA345.6 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water144.3 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
1H-Pyrrole-2-carboxaldehydeO=CC1=CC=CN11924.1Standard polar33892256
1H-Pyrrole-2-carboxaldehydeO=CC1=CC=CN1953.5Standard non polar33892256
1H-Pyrrole-2-carboxaldehydeO=CC1=CC=CN11016.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
1H-Pyrrole-2-carboxaldehyde,1TMS,isomer #1C[Si](C)(C)N1C=CC=C1C=O1165.3Semi standard non polar33892256
1H-Pyrrole-2-carboxaldehyde,1TMS,isomer #1C[Si](C)(C)N1C=CC=C1C=O1302.6Standard non polar33892256
1H-Pyrrole-2-carboxaldehyde,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1C=CC=C1C=O1432.8Semi standard non polar33892256
1H-Pyrrole-2-carboxaldehyde,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1C=CC=C1C=O1498.0Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 1H-Pyrrole-2-carboxaldehyde GC-MS (Non-derivatized) - 70eV, Positivesplash10-0002-9000000000-5f2e8ffab711dbfed89a2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1H-Pyrrole-2-carboxaldehyde GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1H-Pyrrole-2-carboxaldehyde GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Pyrrole-2-carboxaldehyde 10V, Positive-QTOFsplash10-0002-9000000000-8b5ca5b4e63626d5b0c92016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Pyrrole-2-carboxaldehyde 20V, Positive-QTOFsplash10-00kb-9000000000-b56e5fbfb2163d229a212016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Pyrrole-2-carboxaldehyde 40V, Positive-QTOFsplash10-014i-9000000000-b40daf136319bc0639bf2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Pyrrole-2-carboxaldehyde 10V, Negative-QTOFsplash10-0006-9000000000-146097e8a420f5d9d1282016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Pyrrole-2-carboxaldehyde 20V, Negative-QTOFsplash10-0006-9000000000-fa12013eb915691d9b662016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Pyrrole-2-carboxaldehyde 40V, Negative-QTOFsplash10-0006-9000000000-3d161254a77dfc3829c22016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Pyrrole-2-carboxaldehyde 10V, Negative-QTOFsplash10-014l-9000000000-5ffd41c3abfd6adaa9992021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Pyrrole-2-carboxaldehyde 20V, Negative-QTOFsplash10-014i-9000000000-3f070060c5785123e18c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Pyrrole-2-carboxaldehyde 40V, Negative-QTOFsplash10-014i-9000000000-80bc8672cf39bfa9cc282021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Pyrrole-2-carboxaldehyde 10V, Positive-QTOFsplash10-00kb-9000000000-2f76e9a1377d985ef7e72021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Pyrrole-2-carboxaldehyde 20V, Positive-QTOFsplash10-014i-9000000000-2419053da3a96c61562e2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-Pyrrole-2-carboxaldehyde 40V, Positive-QTOFsplash10-0f79-9000000000-6d571bd229680b1b1ab62021-09-23Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB014879
KNApSAcK IDC00052636
Chemspider ID13254
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound13854
PDB IDNot Available
ChEBI ID59978
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1279691
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .