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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 20:55:10 UTC

Update Date

2022-03-07 02:54:40 UTC

HMDB ID

HMDB0035877

Secondary Accession Numbers

HMDB35877

Metabolite Identification

Common Name

(Z)-13-Hexadecenoic acid

Description

(Z)-13-Hexadecenoic acid, also known as (Z)-13-hexadecenoate, belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms. Based on a literature review a small amount of articles have been published on (Z)-13-Hexadecenoic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0035877
     RDKit          3D
(Z)-13-Hexadecenoic acid
 48 47  0  0  0  0  0  0  0  0999 V2000
   -7.0616    0.8839   -0.0661 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8700    0.6493    0.8797 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0146    1.8215    0.9662 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7543    1.8545    0.6390 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0339    0.6819    0.1325 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4769    0.9364   -1.2771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7484   -0.2845   -1.7731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5798   -0.6854   -0.9005 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0314   -1.9136   -1.5440 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2117   -2.4436   -0.7967 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3302   -1.4104   -0.6984 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4518   -2.0679    0.0719 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6313   -1.1623    0.2450 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2133    0.0849    1.0059 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4575    0.9393    1.1394 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1951    2.1944    1.8649 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0611    2.4776    2.3008 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2426    3.0689    2.0589 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8973    0.1923    0.2407 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3971    1.9251    0.0180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7825    0.5744   -1.0900 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4036   -0.3099    0.6402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3790    0.4797    1.8834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4554    2.7691    1.3384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1489    2.7794    0.7258 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1038    0.5893    0.7823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5220   -0.2794    0.1942 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3723    1.0726   -1.9171 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8585    1.8346   -1.3011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3586   -0.1584   -2.7985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4378   -1.1696   -1.8322 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1561    0.1334   -0.9436 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8891   -0.8995    0.1505 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3896   -1.5910   -2.5500 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6936   -2.7212   -1.7028 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6256   -3.2876   -1.3859 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9680   -2.8427    0.1986 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6467   -1.1341   -1.7021 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8903   -0.5482   -0.1185 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0901   -2.5065    1.0159 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7906   -2.9302   -0.5549 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4719   -1.6794    0.7489 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9961   -0.9012   -0.7733 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4621    0.6288    0.3979 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7703   -0.1923    1.9751 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2116    0.3606    1.7056 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8277    1.1499    0.1304 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1162    3.0368    1.5395 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  2 22  1  0
  2 23  1  0
  3 24  1  0
  4 25  1  0
  5 26  1  0
  5 27  1  0
  6 28  1  0
  6 29  1  0
  7 30  1  0
  7 31  1  0
  8 32  1  0
  8 33  1  0
  9 34  1  0
  9 35  1  0
 10 36  1  0
 10 37  1  0
 11 38  1  0
 11 39  1  0
 12 40  1  0
 12 41  1  0
 13 42  1  0
 13 43  1  0
 14 44  1  0
 14 45  1  0
 15 46  1  0
 15 47  1  0
 18 48  1  0
M  END


  Mrv0541 05061308452D          

 18 17  0  0  0  0            999 V2000
    3.3296    5.2224    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0441    4.8099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0441    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7586    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4730    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1875    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9020    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6164    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3309    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0454    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7599    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4743    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1888    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9033    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6177    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3322    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0467    3.9849    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.3322    2.7474    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  2  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 13 12  1  0  0  0  0
 14 13  1  0  0  0  0
 15 14  1  0  0  0  0
 16 15  1  0  0  0  0
 17 16  2  0  0  0  0
 18 16  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0035877

> <DATABASE_NAME>
hmdb

> <SMILES>
CC\C=C/CCCCCCCCCCCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C16H30O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16(17)18/h3-4H,2,5-15H2,1H3,(H,17,18)/b4-3-

> <INCHI_KEY>
UFRASUJYZLLIJC-ARJAWSKDSA-N

> <FORMULA>
C16H30O2

> <MOLECULAR_WEIGHT>
254.4082

> <EXACT_MASS>
254.224580204

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_AVERAGE_POLARIZABILITY>
33.1233963533628

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(13Z)-hexadec-13-enoic acid

> <ALOGPS_LOGP>
6.72

> <JCHEM_LOGP>
5.894661121

> <ALOGPS_LOGS>
-5.76

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.952019655228562

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
78.20019999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.42e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(13Z)-hexadec-13-enoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0035877
     RDKit          3D
(Z)-13-Hexadecenoic acid
 48 47  0  0  0  0  0  0  0  0999 V2000
   -7.0616    0.8839   -0.0661 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8700    0.6493    0.8797 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0146    1.8215    0.9662 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7543    1.8545    0.6390 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0339    0.6819    0.1325 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4769    0.9364   -1.2771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7484   -0.2845   -1.7731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5798   -0.6854   -0.9005 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0314   -1.9136   -1.5440 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2117   -2.4436   -0.7967 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3302   -1.4104   -0.6984 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4518   -2.0679    0.0719 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6313   -1.1623    0.2450 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2133    0.0849    1.0059 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4575    0.9393    1.1394 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1951    2.1944    1.8649 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0611    2.4776    2.3008 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2426    3.0689    2.0589 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8973    0.1923    0.2407 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3971    1.9251    0.0180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7825    0.5744   -1.0900 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4036   -0.3099    0.6402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3790    0.4797    1.8834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4554    2.7691    1.3384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1489    2.7794    0.7258 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1038    0.5893    0.7823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5220   -0.2794    0.1942 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3723    1.0726   -1.9171 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8585    1.8346   -1.3011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3586   -0.1584   -2.7985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4378   -1.1696   -1.8322 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1561    0.1334   -0.9436 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8891   -0.8995    0.1505 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3896   -1.5910   -2.5500 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6936   -2.7212   -1.7028 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6256   -3.2876   -1.3859 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9680   -2.8427    0.1986 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6467   -1.1341   -1.7021 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8903   -0.5482   -0.1185 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0901   -2.5065    1.0159 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7906   -2.9302   -0.5549 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4719   -1.6794    0.7489 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9961   -0.9012   -0.7733 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4621    0.6288    0.3979 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7703   -0.1923    1.9751 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2116    0.3606    1.7056 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8277    1.1499    0.1304 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1162    3.0368    1.5395 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  2 22  1  0
  2 23  1  0
  3 24  1  0
  4 25  1  0
  5 26  1  0
  5 27  1  0
  6 28  1  0
  6 29  1  0
  7 30  1  0
  7 31  1  0
  8 32  1  0
  8 33  1  0
  9 34  1  0
  9 35  1  0
 10 36  1  0
 10 37  1  0
 11 38  1  0
 11 39  1  0
 12 40  1  0
 12 41  1  0
 13 42  1  0
 13 43  1  0
 14 44  1  0
 14 45  1  0
 15 46  1  0
 15 47  1  0
 18 48  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       6.215   9.748   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.549   8.978   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.549   7.438   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.883   6.668   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.216   7.438   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      11.550   6.668   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      12.884   7.438   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      14.217   6.668   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      15.551   7.438   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      16.885   6.668   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      18.218   7.438   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      19.552   6.668   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      20.886   7.438   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      22.219   6.668   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      23.553   7.438   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      24.887   6.668   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      26.221   7.438   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0      24.887   5.128   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   34    0
END

COMPND    HMDB0035877
HETATM    1  C1  UNL     1      -7.062   0.884  -0.066  1.00  0.00           C  
HETATM    2  C2  UNL     1      -5.870   0.649   0.880  1.00  0.00           C  
HETATM    3  C3  UNL     1      -5.015   1.822   0.966  1.00  0.00           C  
HETATM    4  C4  UNL     1      -3.754   1.854   0.639  1.00  0.00           C  
HETATM    5  C5  UNL     1      -3.034   0.682   0.133  1.00  0.00           C  
HETATM    6  C6  UNL     1      -2.477   0.936  -1.277  1.00  0.00           C  
HETATM    7  C7  UNL     1      -1.748  -0.285  -1.773  1.00  0.00           C  
HETATM    8  C8  UNL     1      -0.580  -0.685  -0.900  1.00  0.00           C  
HETATM    9  C9  UNL     1       0.031  -1.914  -1.544  1.00  0.00           C  
HETATM   10  C10 UNL     1       1.212  -2.444  -0.797  1.00  0.00           C  
HETATM   11  C11 UNL     1       2.330  -1.410  -0.698  1.00  0.00           C  
HETATM   12  C12 UNL     1       3.452  -2.068   0.072  1.00  0.00           C  
HETATM   13  C13 UNL     1       4.631  -1.162   0.245  1.00  0.00           C  
HETATM   14  C14 UNL     1       4.213   0.085   1.006  1.00  0.00           C  
HETATM   15  C15 UNL     1       5.458   0.939   1.139  1.00  0.00           C  
HETATM   16  C16 UNL     1       5.195   2.194   1.865  1.00  0.00           C  
HETATM   17  O1  UNL     1       4.061   2.478   2.301  1.00  0.00           O  
HETATM   18  O2  UNL     1       6.243   3.069   2.059  1.00  0.00           O  
HETATM   19  H1  UNL     1      -7.897   0.192   0.241  1.00  0.00           H  
HETATM   20  H2  UNL     1      -7.397   1.925   0.018  1.00  0.00           H  
HETATM   21  H3  UNL     1      -6.783   0.574  -1.090  1.00  0.00           H  
HETATM   22  H4  UNL     1      -5.404  -0.310   0.640  1.00  0.00           H  
HETATM   23  H5  UNL     1      -6.379   0.480   1.883  1.00  0.00           H  
HETATM   24  H6  UNL     1      -5.455   2.769   1.338  1.00  0.00           H  
HETATM   25  H7  UNL     1      -3.149   2.779   0.726  1.00  0.00           H  
HETATM   26  H8  UNL     1      -2.104   0.589   0.782  1.00  0.00           H  
HETATM   27  H9  UNL     1      -3.522  -0.279   0.194  1.00  0.00           H  
HETATM   28  H10 UNL     1      -3.372   1.073  -1.917  1.00  0.00           H  
HETATM   29  H11 UNL     1      -1.859   1.835  -1.301  1.00  0.00           H  
HETATM   30  H12 UNL     1      -1.359  -0.158  -2.798  1.00  0.00           H  
HETATM   31  H13 UNL     1      -2.438  -1.170  -1.832  1.00  0.00           H  
HETATM   32  H14 UNL     1       0.156   0.133  -0.944  1.00  0.00           H  
HETATM   33  H15 UNL     1      -0.889  -0.900   0.150  1.00  0.00           H  
HETATM   34  H16 UNL     1       0.390  -1.591  -2.550  1.00  0.00           H  
HETATM   35  H17 UNL     1      -0.694  -2.721  -1.703  1.00  0.00           H  
HETATM   36  H18 UNL     1       1.626  -3.288  -1.386  1.00  0.00           H  
HETATM   37  H19 UNL     1       0.968  -2.843   0.199  1.00  0.00           H  
HETATM   38  H20 UNL     1       2.647  -1.134  -1.702  1.00  0.00           H  
HETATM   39  H21 UNL     1       1.890  -0.548  -0.119  1.00  0.00           H  
HETATM   40  H22 UNL     1       3.090  -2.506   1.016  1.00  0.00           H  
HETATM   41  H23 UNL     1       3.791  -2.930  -0.555  1.00  0.00           H  
HETATM   42  H24 UNL     1       5.472  -1.679   0.749  1.00  0.00           H  
HETATM   43  H25 UNL     1       4.996  -0.901  -0.773  1.00  0.00           H  
HETATM   44  H26 UNL     1       3.462   0.629   0.398  1.00  0.00           H  
HETATM   45  H27 UNL     1       3.770  -0.192   1.975  1.00  0.00           H  
HETATM   46  H28 UNL     1       6.212   0.361   1.706  1.00  0.00           H  
HETATM   47  H29 UNL     1       5.828   1.150   0.130  1.00  0.00           H  
HETATM   48  H30 UNL     1       7.116   3.037   1.539  1.00  0.00           H  
CONECT    1    2   19   20   21
CONECT    2    3   22   23
CONECT    3    4    4   24
CONECT    4    5   25
CONECT    5    6   26   27
CONECT    6    7   28   29
CONECT    7    8   30   31
CONECT    8    9   32   33
CONECT    9   10   34   35
CONECT   10   11   36   37
CONECT   11   12   38   39
CONECT   12   13   40   41
CONECT   13   14   42   43
CONECT   14   15   44   45
CONECT   15   16   46   47
CONECT   16   17   17   18
CONECT   18   48
END

HMDB0035877
     RDKit          3D
(Z)-13-Hexadecenoic acid
 48 47  0  0  0  0  0  0  0  0999 V2000
   -7.0616    0.8839   -0.0661 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8700    0.6493    0.8797 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0146    1.8215    0.9662 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7543    1.8545    0.6390 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0339    0.6819    0.1325 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4769    0.9364   -1.2771 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7484   -0.2845   -1.7731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5798   -0.6854   -0.9005 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0314   -1.9136   -1.5440 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2117   -2.4436   -0.7967 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3302   -1.4104   -0.6984 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4518   -2.0679    0.0719 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6313   -1.1623    0.2450 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2133    0.0849    1.0059 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4575    0.9393    1.1394 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1951    2.1944    1.8649 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0611    2.4776    2.3008 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2426    3.0689    2.0589 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8973    0.1923    0.2407 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3971    1.9251    0.0180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7825    0.5744   -1.0900 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4036   -0.3099    0.6402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3790    0.4797    1.8834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4554    2.7691    1.3384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1489    2.7794    0.7258 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1038    0.5893    0.7823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5220   -0.2794    0.1942 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3723    1.0726   -1.9171 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8585    1.8346   -1.3011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3586   -0.1584   -2.7985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4378   -1.1696   -1.8322 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1561    0.1334   -0.9436 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8891   -0.8995    0.1505 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3896   -1.5910   -2.5500 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6936   -2.7212   -1.7028 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6256   -3.2876   -1.3859 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9680   -2.8427    0.1986 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6467   -1.1341   -1.7021 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8903   -0.5482   -0.1185 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0901   -2.5065    1.0159 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7906   -2.9302   -0.5549 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4719   -1.6794    0.7489 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9961   -0.9012   -0.7733 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4621    0.6288    0.3979 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7703   -0.1923    1.9751 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2116    0.3606    1.7056 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8277    1.1499    0.1304 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1162    3.0368    1.5395 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  2 22  1  0
  2 23  1  0
  3 24  1  0
  4 25  1  0
  5 26  1  0
  5 27  1  0
  6 28  1  0
  6 29  1  0
  7 30  1  0
  7 31  1  0
  8 32  1  0
  8 33  1  0
  9 34  1  0
  9 35  1  0
 10 36  1  0
 10 37  1  0
 11 38  1  0
 11 39  1  0
 12 40  1  0
 12 41  1  0
 13 42  1  0
 13 43  1  0
 14 44  1  0
 14 45  1  0
 15 46  1  0
 15 47  1  0
 18 48  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(Z)-13-Hexadecenoate	Generator
13Z-Hexadecenoate	Generator

Chemical Formula

C₁₆H₃₀O₂

Average Molecular Weight

254.4082

Monoisotopic Molecular Weight

254.224580204

IUPAC Name

(13Z)-hexadec-13-enoic acid

Traditional Name

(13Z)-hexadec-13-enoic acid

CAS Registry Number

Not Available

SMILES

CC\C=C/CCCCCCCCCCCC(O)=O

InChI Identifier

InChI=1S/C16H30O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16(17)18/h3-4H,2,5-15H2,1H3,(H,17,18)/b4-3-

InChI Key

UFRASUJYZLLIJC-ARJAWSKDSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Long-chain fatty acids

Alternative Parents

Substituents

Long-chain fatty acid
Unsaturated fatty acid
Straight chain fatty acid
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Unsaturated fatty acids (LMFA01030264 )

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Organelle

Adiposome (HMDB: HMDB0035877)

Excreta

Biofluid or Excreta

Urine (HMDB: HMDB0035877)

Route of exposure

Enteral

Ingestion (HMDB: HMDB0035877)

Source

Endogenous

Endogenous (HMDB: HMDB0035877)

Animal

Animal (HMDB: HMDB0035877)

Exogenous

Food

Food (HMDB: HMDB0035877)

Aquatic origin

Fish

Fishes (FooDB: FOOD00865)

Exogenous (HMDB: HMDB0035877)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid Peroxidation (HMDB: HMDB0035877)

Biochemical pathway

Metabolic pathway

Fatty Acid Metabolism (HMDB: HMDB0035877)

Lipid metabolism pathway (HMDB: HMDB0035877)

Cellular process

Cell signaling (HMDB: HMDB0035877)

Biochemical process

Lipid transport (HMDB: HMDB0035877)

Role

Biological role

Energy source (HMDB: HMDB0035877)

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0035877)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.00044 g/L	ALOGPS
logP	6.72	ALOGPS
logP	5.89	ChemAxon
logS	-5.8	ALOGPS
pKa (Strongest Acidic)	4.95	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	13	ChemAxon
Refractivity	78.2 m³·mol⁻¹	ChemAxon
Polarizability	33.12 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	168.114	31661259
DarkChem	[M-H]-	168.508	31661259
DeepCCS	[M+H]+	166.831	30932474
DeepCCS	[M-H]-	162.811	30932474
DeepCCS	[M-2H]-	200.574	30932474
DeepCCS	[M+Na]+	176.237	30932474
AllCCS	[M+H]+	170.0	32859911
AllCCS	[M+H-H2O]+	166.7	32859911
AllCCS	[M+NH4]+	173.0	32859911
AllCCS	[M+Na]+	173.8	32859911
AllCCS	[M-H]-	171.1	32859911
AllCCS	[M+Na-2H]-	172.4	32859911
AllCCS	[M+HCOO]-	174.0	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	10.28 minutes	32390414
Predicted by Siyang on May 30, 2022	21.7115 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	1.97 minutes	32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid	34.2 seconds	40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	2862.0 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	581.3 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	229.9 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	341.3 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	555.0 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	925.5 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	771.3 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	83.7 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	2013.4 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	593.5 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1712.3 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	740.8 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	469.1 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	608.9 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	541.0 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.0 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(Z)-13-Hexadecenoic acid	CC\C=C/CCCCCCCCCCCC(O)=O	2925.2	Standard polar	33892256
(Z)-13-Hexadecenoic acid	CC\C=C/CCCCCCCCCCCC(O)=O	1903.3	Standard non polar	33892256
(Z)-13-Hexadecenoic acid	CC\C=C/CCCCCCCCCCCC(O)=O	1974.3	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
(Z)-13-Hexadecenoic acid,1TMS,isomer #1	CC/C=C\CCCCCCCCCCCC(=O)O[Si](C)(C)C	2046.3	Semi standard non polar	33892256
(Z)-13-Hexadecenoic acid,1TBDMS,isomer #1	CC/C=C\CCCCCCCCCCCC(=O)O[Si](C)(C)C(C)(C)C	2300.8	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - (Z)-13-Hexadecenoic acid GC-MS (Non-derivatized) - 70eV, Positive	splash10-0006-8910000000-e2dc8c1c0fd85ccaa557	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (Z)-13-Hexadecenoic acid GC-MS (1 TMS) - 70eV, Positive	splash10-02p0-9531000000-6305c801203aad951f22	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (Z)-13-Hexadecenoic acid GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (Z)-13-Hexadecenoic acid GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (Z)-13-Hexadecenoic acid 10V, Positive-QTOF	splash10-0a4r-0190000000-8e91b2a473ea20ea2caa	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (Z)-13-Hexadecenoic acid 20V, Positive-QTOF	splash10-0a4i-6890000000-2bfd81f2fb2ba717103d	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (Z)-13-Hexadecenoic acid 40V, Positive-QTOF	splash10-0ldu-9700000000-fc50c63816406cd69434	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (Z)-13-Hexadecenoic acid 10V, Negative-QTOF	splash10-0udi-0090000000-84084958e2908b10df4e	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (Z)-13-Hexadecenoic acid 20V, Negative-QTOF	splash10-0zfr-1090000000-83d4d0c81effd59f3383	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (Z)-13-Hexadecenoic acid 40V, Negative-QTOF	splash10-0a4i-9220000000-59a54881fc0140ccdff2	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (Z)-13-Hexadecenoic acid 10V, Positive-QTOF	splash10-0a4r-7590000000-7a16538b6df8aec049ba	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (Z)-13-Hexadecenoic acid 20V, Positive-QTOF	splash10-0apj-9200000000-a58552a2b868f931dda1	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (Z)-13-Hexadecenoic acid 40V, Positive-QTOF	splash10-0apl-9000000000-f0741eeaf6e7d8eed739	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (Z)-13-Hexadecenoic acid 10V, Negative-QTOF	splash10-0udi-0090000000-59ee0bcbfc44b6d6a52a	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (Z)-13-Hexadecenoic acid 20V, Negative-QTOF	splash10-0udr-1090000000-fc48b9720f76954232d4	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (Z)-13-Hexadecenoic acid 40V, Negative-QTOF	splash10-0006-9310000000-c1e7f585fdaf3ed2dd28	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB014658

KNApSAcK ID

Not Available

Chemspider ID

4471841

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5312416

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for (Z)-13-Hexadecenoic acid (HMDB0035877)

MOL for HMDB0035877 ((Z)-13-Hexadecenoic acid)

3D MOL for HMDB0035877 ((Z)-13-Hexadecenoic acid)

3D SDF for HMDB0035877 ((Z)-13-Hexadecenoic acid)

3D-SDF for HMDB0035877 ((Z)-13-Hexadecenoic acid)

PDB for HMDB0035877 ((Z)-13-Hexadecenoic acid)

3D PDB for HMDB0035877 ((Z)-13-Hexadecenoic acid)

SMILES for HMDB0035877 ((Z)-13-Hexadecenoic acid)

INCHI for HMDB0035877 ((Z)-13-Hexadecenoic acid)

Structure for HMDB0035877 ((Z)-13-Hexadecenoic acid)

3D Structure for HMDB0035877 ((Z)-13-Hexadecenoic acid)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra