Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 18:26:36 UTC
Update Date2022-03-07 02:53:49 UTC
HMDB IDHMDB0033688
Secondary Accession Numbers
  • HMDB33688
Metabolite Identification
Common NamePyranomammea C
DescriptionPyranomammea C belongs to the class of organic compounds known as linear pyranocoumarins. These are organic compounds containing a pyran (or a hydrogenated derivative) linearly fused to a coumarin moiety. Pyranomammea C has been detected, but not quantified in, fruits. This could make pyranomammea C a potential biomarker for the consumption of these foods. Based on a literature review a significant number of articles have been published on Pyranomammea C.
Structure
Data?1563862445
Synonyms
ValueSource
M9HMDB
Mammea b/ba cyclo eHMDB
Chemical FormulaC22H28O6
Average Molecular Weight388.4541
Monoisotopic Molecular Weight388.188588628
IUPAC Name5,7-dihydroxy-8,8-dimethyl-10-(3-methylbutanoyl)-4-propyl-2H,6H,7H,8H-pyrano[3,2-g]chromen-2-one
Traditional Name5,7-dihydroxy-8,8-dimethyl-10-(3-methylbutanoyl)-4-propyl-6H,7H-pyrano[3,2-g]chromen-2-one
CAS Registry Number30390-05-7
SMILES
CCCC1=CC(=O)OC2=C1C(O)=C1CC(O)C(C)(C)OC1=C2C(=O)CC(C)C
InChI Identifier
InChI=1S/C22H28O6/c1-6-7-12-9-16(25)27-21-17(12)19(26)13-10-15(24)22(4,5)28-20(13)18(21)14(23)8-11(2)3/h9,11,15,24,26H,6-8,10H2,1-5H3
InChI KeyIWXVZIMHJKPWIP-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as linear pyranocoumarins. These are organic compounds containing a pyran (or a hydrogenated derivative) linearly fused to a coumarin moiety.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassCoumarins and derivatives
Sub ClassPyranocoumarins
Direct ParentLinear pyranocoumarins
Alternative Parents
Substituents
  • Linear pyranocoumarin
  • Pyranochromene
  • 2,2-dimethyl-1-benzopyran
  • Butyrophenone
  • Chromane
  • Benzopyran
  • 1-benzopyran
  • Aryl alkyl ketone
  • Aryl ketone
  • Alkyl aryl ether
  • Pyranone
  • Benzenoid
  • Pyran
  • Heteroaromatic compound
  • Ketone
  • Lactone
  • Secondary alcohol
  • Organoheterocyclic compound
  • Ether
  • Oxacycle
  • Alcohol
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point209 - 212 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.027 g/LALOGPS
logP3.94ALOGPS
logP3.61ChemAxon
logS-4.2ALOGPS
pKa (Strongest Acidic)6.18ChemAxon
pKa (Strongest Basic)-3.3ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area93.06 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity105.99 m³·mol⁻¹ChemAxon
Polarizability42.18 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+188.10531661259
DarkChem[M-H]-188.72331661259
DeepCCS[M+H]+194.01730932474
DeepCCS[M-H]-191.44730932474
DeepCCS[M-2H]-226.19330932474
DeepCCS[M+Na]+201.17830932474
AllCCS[M+H]+191.832859911
AllCCS[M+H-H2O]+189.232859911
AllCCS[M+NH4]+194.232859911
AllCCS[M+Na]+194.932859911
AllCCS[M-H]-199.632859911
AllCCS[M+Na-2H]-200.232859911
AllCCS[M+HCOO]-201.032859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.8.09 minutes32390414
Predicted by Siyang on May 30, 202217.2175 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.28 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid29.2 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2920.6 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid406.8 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid218.8 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid187.9 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid147.5 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid825.0 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid876.1 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)80.2 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1322.4 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid575.0 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1881.9 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid492.3 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid428.2 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate251.6 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA431.1 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water8.9 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Pyranomammea CCCCC1=CC(=O)OC2=C1C(O)=C1CC(O)C(C)(C)OC1=C2C(=O)CC(C)C3577.5Standard polar33892256
Pyranomammea CCCCC1=CC(=O)OC2=C1C(O)=C1CC(O)C(C)(C)OC1=C2C(=O)CC(C)C2987.9Standard non polar33892256
Pyranomammea CCCCC1=CC(=O)OC2=C1C(O)=C1CC(O)C(C)(C)OC1=C2C(=O)CC(C)C3207.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Pyranomammea C,1TMS,isomer #1CCCC1=CC(=O)OC2=C(C(=O)CC(C)C)C3=C(CC(O)C(C)(C)O3)C(O[Si](C)(C)C)=C122853.4Semi standard non polar33892256
Pyranomammea C,1TMS,isomer #2CCCC1=CC(=O)OC2=C(C(=O)CC(C)C)C3=C(CC(O[Si](C)(C)C)C(C)(C)O3)C(O)=C122822.3Semi standard non polar33892256
Pyranomammea C,2TMS,isomer #1CCCC1=CC(=O)OC2=C(C(=O)CC(C)C)C3=C(CC(O[Si](C)(C)C)C(C)(C)O3)C(O[Si](C)(C)C)=C122845.9Semi standard non polar33892256
Pyranomammea C,1TBDMS,isomer #1CCCC1=CC(=O)OC2=C(C(=O)CC(C)C)C3=C(CC(O)C(C)(C)O3)C(O[Si](C)(C)C(C)(C)C)=C123071.6Semi standard non polar33892256
Pyranomammea C,1TBDMS,isomer #2CCCC1=CC(=O)OC2=C(C(=O)CC(C)C)C3=C(CC(O[Si](C)(C)C(C)(C)C)C(C)(C)O3)C(O)=C123049.0Semi standard non polar33892256
Pyranomammea C,2TBDMS,isomer #1CCCC1=CC(=O)OC2=C(C(=O)CC(C)C)C3=C(CC(O[Si](C)(C)C(C)(C)C)C(C)(C)O3)C(O[Si](C)(C)C(C)(C)C)=C123259.5Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Pyranomammea C GC-MS (Non-derivatized) - 70eV, Positivesplash10-0kn9-3019000000-3518fa893b5ef369e1fe2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Pyranomammea C GC-MS (2 TMS) - 70eV, Positivesplash10-014i-9010370000-3f61ec54f25a6d3425dc2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Pyranomammea C GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Pyranomammea C GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyranomammea C 10V, Positive-QTOFsplash10-000i-1019000000-779e5a95af3c13a429ba2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyranomammea C 20V, Positive-QTOFsplash10-0api-4059000000-086901aac22a22bc533c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyranomammea C 40V, Positive-QTOFsplash10-052f-5091000000-7f81b54a83e61c3713102016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyranomammea C 10V, Negative-QTOFsplash10-000i-0009000000-54f05eacd1279740cbb72016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyranomammea C 20V, Negative-QTOFsplash10-0079-9037000000-ca7dc7d75e22b3c24e762016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyranomammea C 40V, Negative-QTOFsplash10-00ri-7192000000-783cb319ad9cb37abe9a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyranomammea C 10V, Negative-QTOFsplash10-000i-0009000000-6009ebb96de57503eeec2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyranomammea C 20V, Negative-QTOFsplash10-000i-0009000000-27e3b016b6fbf43505ed2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyranomammea C 40V, Negative-QTOFsplash10-000l-2195000000-376b2c24713ad76cad9c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyranomammea C 10V, Positive-QTOFsplash10-000i-0009000000-a27878606df99741837d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyranomammea C 20V, Positive-QTOFsplash10-000i-0009000000-889ec8752235965b62b22021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyranomammea C 40V, Positive-QTOFsplash10-0r09-3079000000-1d66c3521b74fed84c502021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB011791
KNApSAcK IDC00054344
Chemspider ID35013658
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound71436829
PDB IDNot Available
ChEBI ID175948
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

Enzymes

General function:
Involved in sulfotransferase activity
Specific function:
Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the sulfate conjugation of many hormones, neurotransmitters, drugs and xenobiotic compounds. Sulfonation increases the water solubility of most compounds, and therefore their renal excretion, but it can also result in bioactivation to form active metabolites. Sulfates hydroxysteroids like DHEA. Isoform 1 preferentially sulfonates cholesterol, and isoform 2 avidly sulfonates pregnenolone but not cholesterol.
Gene Name:
SULT2B1
Uniprot ID:
O00204
Molecular weight:
39598.595
Reactions
Pyranomammea C → [5-hydroxy-2,2-dimethyl-10-(3-methylbutanoyl)-8-oxo-6-propyl-2H,3H,4H,8H-pyrano[3,2-g]chromen-3-yl]oxidanesulfonic aciddetails
General function:
Involved in transferase activity, transferring hexosyl groups
Specific function:
UDPGT is of major importance in the conjugation and subsequent elimination of potentially toxic xenobiotics and endogenous compounds. This isoform glucuronidates bilirubin IX-alpha to form both the IX-alpha-C8 and IX-alpha-C12 monoconjugates and diconjugate. Is also able to catalyze the glucuronidation of 17beta-estradiol, 17alpha-ethinylestradiol, 1-hydroxypyrene, 4-methylumbelliferone, 1-naphthol, paranitrophenol, scopoletin, and umbelliferone.
Gene Name:
UGT1A1
Uniprot ID:
P22309
Molecular weight:
59590.91
Reactions
Pyranomammea C → 3,4,5-trihydroxy-6-{[3-hydroxy-2,2-dimethyl-10-(3-methylbutanoyl)-8-oxo-6-propyl-2H,3H,4H,8H-pyrano[3,2-g]chromen-5-yl]oxy}oxane-2-carboxylic aciddetails