Hmdb loader

Showing metabocard for OPC6-CoA (HMDB0011114)

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IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesenzymes (3) Show 3 proteinsXML
enzymes (3) Show 3 proteins
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2008-10-16 22:30:46 UTC
Update Date2022-03-07 02:51:03 UTC
HMDB IDHMDB0011114
Secondary Accession Numbers
  • HMDB11114
Metabolite Identification
Common NameOPC6-CoA
Description(2R)-4-({[({[(2R,3R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-2-hydroxy-3,3-dimethyl-N-(2-{[2-({6-[(2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]hexanoyl}sulfanyl)ethyl]-C-hydroxycarbonimidoyl}ethyl)butanimidic acid belongs to the class of organic compounds known as 2,3,4-saturated fatty acyl coas. These are acyl-CoAs carrying a 2,3,4-saturated fatty acyl chain (2R)-4-({[({[(2R,3R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-2-hydroxy-3,3-dimethyl-N-(2-{[2-({6-[(2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]hexanoyl}sulfanyl)ethyl]-C-hydroxycarbonimidoyl}ethyl)butanimidic acid is a strong basic compound (based on its pKa).
Structure
Data?1582752869
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0011114 (OPC6-CoA)


  Mrv0541 02241201192D          

 67 70  0  0  1  0            999 V2000
   32.6663   -8.0655    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.6663   -9.1531    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   33.6082   -7.5217    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   34.5501   -8.0655    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   34.5501   -9.1532    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   33.6082   -9.6970    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   31.6318   -7.7294    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   30.9926   -8.6093    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.6318   -9.4893    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   33.6082   -6.5739    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   31.1774  -11.6622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.9281  -11.6622    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   29.5421  -10.8236    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   30.5528  -10.1872    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   31.5957  -10.7850    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   31.1702  -12.5809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   29.8838  -12.5809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   29.5342   -9.8402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.3597   -9.8402    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   28.8058  -12.2453    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   28.8058  -11.3631    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   27.9096  -12.5530    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   28.4143  -13.2394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   27.4355   -9.4068    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   27.4355   -8.5246    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   26.4833   -9.8682    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   27.0440  -10.4009    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.5592   -9.4347    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   25.5592   -8.5525    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.6070   -9.8962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.1676  -10.4288    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.7402   -9.4530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4521   -9.8698    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.1691   -9.4617    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   18.8810   -9.8786    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.5980   -9.4705    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   21.0269   -9.4793    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   21.7388   -9.8962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.4558   -9.4881    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   23.1728   -9.8962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.8898   -9.4881    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.6942  -10.4592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.6870  -10.4872    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.7337  -10.7212    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.0298   -8.8652    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.8972   -8.8652    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.8759  -10.7036    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.0232   -9.8611    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   14.5943   -9.8523    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3113   -9.4442    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3164   -8.6192    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.7365   -9.8347    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4535   -9.4265    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   13.8824   -9.4354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1994   -9.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7144   -8.6997    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1994   -8.0323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9840   -8.2872    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.9840   -9.1122    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0561   -7.3779    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8357   -7.6834    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4718   -8.0840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2397   -8.0840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9313   -7.6847    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5454   -8.0902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  2  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9  2  1  0  0  0  0
  3 10  1  0  0  0  0
 12 11  1  1  0  0  0
 13 12  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 11  1  1  0  0  0
 11 16  1  0  0  0  0
 12 17  1  0  0  0  0
 15  9  1  0  0  0  0
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 18 19  1  0  0  0  0
 20 21  2  0  0  0  0
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 28 29  2  0  0  0  0
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 33 32  1  0  0  0  0
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 35 48  2  0  0  0  0
 32 49  1  0  0  0  0
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 49 51  1  0  0  0  0
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 54 53  1  0  0  0  0
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 63 64  1  0  0  0  0
 64 65  2  0  0  0  0
 65 66  1  0  0  0  0
 66 67  1  0  0  0  0
M  END
Download

3D MOL for HMDB0011114 (OPC6-CoA)

HMDB0011114
     RDKit          3D
OPC6-CoA
126129  0  0  0  0  0  0  0  0999 V2000
   15.5825    3.3666    1.7755 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5929    2.2415    1.4099 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8521    1.7365    0.0599 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1703    0.4844   -0.2014 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3271   -0.6114    0.7206 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5133   -1.8303    0.5435 C   0  0  2  0  0  0  0  0  0  0  0  0
   14.7318   -2.4718   -0.7831 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7725   -2.4960   -1.3806 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.4463   -3.0618   -1.2159 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6154   -3.1125    0.0771 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0541   -1.8207    0.7224 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2869   -0.6743    0.1830 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7864   -0.8925    0.4427 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0555    0.3496   -0.0547 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5769    0.2824    0.1002 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9250   -0.8409   -0.6893 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1642   -0.6976   -2.1303 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1714   -1.2609   -2.5934 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1726    0.1943   -3.2783 S   0  0  0  0  0  0  0  0  0  0  0  0
    5.6362    0.8273   -2.6250 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5841   -0.2051   -2.3580 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4046    0.4532   -1.7980 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.2285   -0.2518   -1.4847 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1930   -1.4837   -1.7092 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0509    0.4496   -0.8992 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1047   -0.4877   -0.8574 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2638    0.1567   -0.2429 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2033    0.5713    1.0909 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1076    0.3630    1.7273 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3143    1.2263    1.7876 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8097    1.7540    3.0135 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4101    0.2584    2.1110 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9281   -0.8805    2.9905 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4222    1.0310    2.9635 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1715   -0.2622    0.9285 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7248    0.8082    0.2779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6530    0.4535   -1.0649 P   0  0  0  0  0  5  0  0  0  0  0  0
   -5.2647    1.4779   -2.1398 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3444   -1.0709   -1.7207 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2998    0.7171   -0.7779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2936   -0.3560   -1.6091 P   0  0  0  0  0  5  0  0  0  0  0  0
   -8.4527    0.1778   -3.0319 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6823   -1.9072   -1.7134 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8621   -0.3633   -0.9444 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8080   -0.5175    0.4302 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1354   -0.5132    1.0958 C   0  0  1  0  0  0  0  0  0  0  0  0
  -11.8490    0.6607    0.9053 O   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0623    0.3903    1.5063 C   0  0  1  0  0  0  0  0  0  0  0  0
  -14.1125    1.2370    0.9637 N   0  0  0  0  0  0  0  0  0  0  0  0
  -15.4454    1.0663    0.9596 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.0374    2.0982    0.3492 N   0  0  0  0  0  0  0  0  0  0  0  0
  -15.0863    2.9719   -0.0614 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.1367    4.1715   -0.7236 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.3583    4.7432   -1.1295 N   0  0  0  0  0  0  0  0  0  0  0  0
  -13.9723    4.7959   -0.9802 N   0  0  0  0  0  0  0  0  0  0  0  0
  -12.8063    4.2689   -0.6043 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7659    3.0929    0.0442 N   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8855    2.4068    0.3376 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.3954   -1.0499    1.2775 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5683   -1.7052    2.4953 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1068   -1.5442    0.5974 C   0  0  1  0  0  0  0  0  0  0  0  0
  -12.2593   -1.4516   -0.7781 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1586   -2.9890   -1.4364 P   0  0  0  0  0  5  0  0  0  0  0  0
  -12.6694   -2.9980   -2.8635 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5439   -3.4759   -1.4154 O   0  0  0  0  0  0  0  0  0  0  0  0
  -13.1210   -4.0920   -0.5741 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.6166    3.0079    1.6882 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.3989    4.2605    1.1292 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.4150    3.6940    2.8201 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6023    2.7963    1.3453 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.4648    1.5226    2.2002 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.7640    2.4856   -0.7577 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.3307    0.2670   -1.2773 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.1433   -0.2485    1.7737 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.4120   -0.9687    0.7930 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.8960   -2.6361    1.2755 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.5609   -4.0781   -1.6530 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.9074   -2.4406   -1.9461 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.5587   -3.2344   -0.0912 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0359   -3.9941    0.6361 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.8066   -1.9560    1.8378 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.5774    0.3030    0.6553 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.3797   -0.5249   -0.9072 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5547   -1.1749    1.4615 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4593   -1.7046   -0.2375 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.2885    0.4716   -1.1304 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4187    1.2695    0.4521 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1592    1.2534   -0.2137 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3101    0.0937    1.1669 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3159   -1.8197   -0.3240 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8645   -0.8174   -0.4501 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8875    1.3737   -1.6685 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1862    1.6070   -3.2735 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2404   -0.6869   -3.3206 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8603   -1.0032   -1.6688 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4358    1.4790   -1.6263 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3795    0.8477    0.0718 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7469    1.2901   -1.5935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3361   -0.7638   -1.9197 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1259   -1.4089   -0.2874 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0985    0.3034   -0.8310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7181    2.0552    1.1951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0862    1.2272    3.7799 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9005   -0.6071    4.0562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6482   -1.7369    2.8972 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9604   -1.2842    2.6333 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4252    0.5535    2.8311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4462    2.0670    2.5950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0820    0.9562    4.0064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5776   -0.9574    0.3480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0663   -0.8113    1.3916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1409   -1.7433   -1.0210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9369   -2.3011   -2.5806 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2079    0.3075    0.9104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2544   -1.4445    0.6312 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.0185   -0.6384    2.1898 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9321    0.5723    2.6131 H   0  0  0  0  0  0  0  0  0  0  0  0
  -15.9357    0.2133    1.3926 H   0  0  0  0  0  0  0  0  0  0  0  0
  -17.2391    4.6990   -0.5621 H   0  0  0  0  0  0  0  0  0  0  0  0
  -16.3656    5.2346   -2.0537 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8729    4.7789   -0.8150 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.2441   -1.2201    0.5882 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.8508   -1.3413    3.1058 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.9432   -2.5596    0.9757 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5021   -4.4140   -1.1361 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6111   -4.3796    0.2274 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  2  0
 17 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  2  0
 23 25  1  0
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 27 28  1  0
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 28 30  1  0
 30 31  1  0
 30 32  1  0
 32 33  1  0
 32 34  1  0
 32 35  1  0
 35 36  1  0
 36 37  1  0
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 44 45  1  0
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 51 52  1  0
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 48 59  1  0
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 11  6  1  0
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  1 67  1  0
  1 68  1  0
  1 69  1  0
  2 70  1  0
  2 71  1  0
  3 72  1  0
  4 73  1  0
  5 74  1  0
  5 75  1  0
  6 76  1  1
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 16 91  1  0
 20 92  1  0
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 21 95  1  0
 22 96  1  0
 25 97  1  0
 25 98  1  0
 26 99  1  0
 26100  1  0
 27101  1  0
 30102  1  6
 31103  1  0
 33104  1  0
 33105  1  0
 33106  1  0
 34107  1  0
 34108  1  0
 34109  1  0
 35110  1  0
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 39112  1  0
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 45114  1  0
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 48117  1  1
 50118  1  0
 54119  1  0
 54120  1  0
 56121  1  0
 59122  1  0
 60123  1  0
 61124  1  6
 65125  1  0
 66126  1  0
M  END
Download

3D SDF for HMDB0011114 (OPC6-CoA)


  Mrv0541 02241201192D          

 67 70  0  0  1  0            999 V2000
   32.6663   -8.0655    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.6663   -9.1531    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   33.6082   -7.5217    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   34.5501   -8.0655    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   34.5501   -9.1532    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   33.6082   -9.6970    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   31.6318   -7.7294    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   30.9926   -8.6093    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.6318   -9.4893    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   33.6082   -6.5739    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   31.1774  -11.6622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.9281  -11.6622    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   29.5421  -10.8236    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   30.5528  -10.1872    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   31.5957  -10.7850    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   31.1702  -12.5809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   29.8838  -12.5809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   29.5342   -9.8402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.3597   -9.8402    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   28.8058  -12.2453    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   28.8058  -11.3631    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   27.9096  -12.5530    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   28.4143  -13.2394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   27.4355   -9.4068    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   27.4355   -8.5246    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   26.4833   -9.8682    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   27.0440  -10.4009    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.5592   -9.4347    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   25.5592   -8.5525    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.6070   -9.8962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.1676  -10.4288    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.7402   -9.4530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4521   -9.8698    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.1691   -9.4617    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   18.8810   -9.8786    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.5980   -9.4705    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.3099   -9.8874    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.0269   -9.4793    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   21.7388   -9.8962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.4558   -9.4881    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   23.1728   -9.8962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.8898   -9.4881    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.6942  -10.4592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.6870  -10.4872    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.7337  -10.7212    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.0298   -8.8652    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.8972   -8.8652    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.8759  -10.7036    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.0232   -9.8611    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   14.5943   -9.8523    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3113   -9.4442    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3164   -8.6192    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.7365   -9.8347    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4535   -9.4265    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1654   -9.8434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.8824   -9.4354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1994   -9.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7144   -8.6997    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1994   -8.0323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9840   -8.2872    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.9840   -9.1122    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0561   -7.3779    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8357   -7.6834    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4718   -8.0840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2397   -8.0840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9313   -7.6847    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5454   -8.0902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  2  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9  2  1  0  0  0  0
  3 10  1  0  0  0  0
 12 11  1  1  0  0  0
 13 12  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 11  1  1  0  0  0
 11 16  1  0  0  0  0
 12 17  1  0  0  0  0
 15  9  1  0  0  0  0
 13 18  1  0  0  0  0
 18 19  1  0  0  0  0
 20 21  2  0  0  0  0
 20 17  1  0  0  0  0
 20 22  1  0  0  0  0
 20 23  1  0  0  0  0
 24 25  2  0  0  0  0
 24 19  1  0  0  0  0
 24 26  1  0  0  0  0
 24 27  1  0  0  0  0
 28 29  2  0  0  0  0
 28 26  1  0  0  0  0
 28 30  1  0  0  0  0
 28 31  1  0  0  0  0
 33 32  1  0  0  0  0
 34 33  1  0  0  0  0
 35 34  1  0  0  0  0
 36 35  1  0  0  0  0
 37 36  1  0  0  0  0
 38 37  1  0  0  0  0
 39 38  1  0  0  0  0
 40 39  1  0  0  0  0
 41 40  1  0  0  0  0
 42 41  1  0  0  0  0
 30 42  1  0  0  0  0
 41 43  1  0  0  0  0
 41 44  1  0  0  0  0
 39 45  2  0  0  0  0
 40 46  1  6  0  0  0
 40 47  1  1  0  0  0
 35 48  2  0  0  0  0
 32 49  1  0  0  0  0
 51 50  1  0  0  0  0
 49 51  1  0  0  0  0
 51 52  2  0  0  0  0
 54 53  1  0  0  0  0
 55 54  1  0  0  0  0
 56 55  1  0  0  0  0
 50 56  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
 60 61  1  0  0  0  0
 61 57  1  0  0  0  0
 53 61  1  1  0  0  0
 59 62  2  0  0  0  0
 60 63  1  1  0  0  0
 63 64  1  0  0  0  0
 64 65  2  0  0  0  0
 65 66  1  0  0  0  0
 66 67  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0011114

> <DATABASE_NAME>
hmdb

> <SMILES>
CC\C=C/C[C@@H]1C(=O)CCC1CCCCCC(=O)SCCNC(=O)CCNC(=O)[C@@](O)([H])C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@H]1O[C@H](C(O)[C@H]1OP(=O)(O)O)N1C=NC2=C1N=CN=C2N

> <INCHI_IDENTIFIER>
InChI=1S/C37H60N7O18P3S/c1-4-5-7-11-24-23(13-14-25(24)45)10-8-6-9-12-28(47)66-18-17-39-27(46)15-16-40-35(50)32(49)37(2,3)20-59-65(56,57)62-64(54,55)58-19-26-31(61-63(51,52)53)30(48)36(60-26)44-22-43-29-33(38)41-21-42-34(29)44/h5,7,21-24,26,30-32,36,48-49H,4,6,8-20H2,1-3H3,(H,39,46)(H,40,50)(H,54,55)(H,56,57)(H2,38,41,42)(H2,51,52,53)/b7-5-/t23?,24-,26+,30?,31-,32-,36+/m0/s1

> <INCHI_KEY>
VWFUYQVGVAEVNH-ZAPFENOOSA-N

> <FORMULA>
C37H60N7O18P3S

> <MOLECULAR_WEIGHT>
1015.895

> <EXACT_MASS>
1015.292838377

> <JCHEM_ACCEPTOR_COUNT>
18

> <JCHEM_AVERAGE_POLARIZABILITY>
97.3220766771487

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-2,2-dimethyl-3-[(2-{[2-({6-[(2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]hexanoyl}sulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]propoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid

> <ALOGPS_LOGP>
1.51

> <JCHEM_LOGP>
-2.5592796179663555

> <ALOGPS_LOGS>
-2.66

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-4

> <JCHEM_PKA>
2.6787711798581504

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.8252479627216047

> <JCHEM_PKA_STRONGEST_BASIC>
4.946047024039826

> <JCHEM_POLAR_SURFACE_AREA>
380.6999999999999

> <JCHEM_REFRACTIVITY>
236.52480000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
29

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.24e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2R,3R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-[({hydroxy[hydroxy(3R)-3-hydroxy-2,2-dimethyl-3-[(2-{[2-({6-[(2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]hexanoyl}sulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]propoxyphosphoryl]oxyphosphoryl}oxy)methyl]oxolan-3-yl]oxyphosphonic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0011114 (OPC6-CoA)

HMDB0011114
     RDKit          3D
OPC6-CoA
126129  0  0  0  0  0  0  0  0999 V2000
   15.5825    3.3666    1.7755 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

PDB for HMDB0011114 (OPC6-CoA)

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      60.977 -15.056   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      60.977 -17.086   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      62.735 -14.041   0.000  0.00  0.00           C+0
HETATM    4  N   UNK     0      64.494 -15.056   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0      64.494 -17.086   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0      62.735 -18.101   0.000  0.00  0.00           N+0
HETATM    7  N   UNK     0      59.046 -14.428   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0      57.853 -16.071   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0      59.046 -17.713   0.000  0.00  0.00           N+0
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HETATM   12  C   UNK     0      55.866 -21.769   0.000  0.00  0.00           C+0
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HETATM   15  C   UNK     0      58.979 -20.132   0.000  0.00  0.00           C+0
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HETATM   24  P   UNK     0      51.213 -17.559   0.000  0.00  0.00           P+0
HETATM   25  O   UNK     0      51.213 -15.913   0.000  0.00  0.00           O+0
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HETATM   27  O   UNK     0      50.482 -19.415   0.000  0.00  0.00           O+0
HETATM   28  P   UNK     0      47.711 -17.611   0.000  0.00  0.00           P+0
HETATM   29  O   UNK     0      47.711 -15.965   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      45.933 -18.473   0.000  0.00  0.00           O+0
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HETATM   32  C   UNK     0      31.248 -17.646   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      32.577 -18.424   0.000  0.00  0.00           C+0
HETATM   34  N   UNK     0      33.916 -17.662   0.000  0.00  0.00           N+0
HETATM   35  C   UNK     0      35.245 -18.440   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      36.583 -17.678   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      37.912 -18.456   0.000  0.00  0.00           C+0
HETATM   38  N   UNK     0      39.250 -17.695   0.000  0.00  0.00           N+0
HETATM   39  C   UNK     0      40.579 -18.473   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      41.917 -17.711   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      43.256 -18.473   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      44.594 -17.711   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      42.363 -19.524   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      44.216 -19.576   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      40.570 -20.013   0.000  0.00  0.00           O+0
HETATM   46  O   UNK     0      42.989 -16.548   0.000  0.00  0.00           O+0
HETATM   47  H   UNK     0      40.875 -16.548   0.000  0.00  0.00           H+0
HETATM   48  O   UNK     0      35.235 -19.980   0.000  0.00  0.00           O+0
HETATM   49  S   UNK     0      29.910 -18.407   0.000  0.00  0.00           S+0
HETATM   50  C   UNK     0      27.243 -18.391   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      28.581 -17.629   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0      28.591 -16.089   0.000  0.00  0.00           O+0
HETATM   53  C   UNK     0      21.908 -18.358   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      23.247 -17.596   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      24.575 -18.374   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      25.914 -17.613   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      19.039 -17.485   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      18.134 -16.239   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      19.039 -14.994   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      20.503 -15.469   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0      20.503 -17.009   0.000  0.00  0.00           C+0
HETATM   62  O   UNK     0      18.771 -13.772   0.000  0.00  0.00           O+0
HETATM   63  C   UNK     0      22.093 -14.342   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0      23.281 -15.090   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0      24.714 -15.090   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0      26.005 -14.345   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0      27.151 -15.102   0.000  0.00  0.00           C+0
CONECT    1    2    3    7                                                  
CONECT    2    1    6    9                                                  
CONECT    3    1    4   10                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    2                                                       
CONECT    7    1    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8    2   15                                                  
CONECT   10    3                                                            
CONECT   11   12   15   16                                                  
CONECT   12   11   13   17                                                  
CONECT   13   12   14   18                                                  
CONECT   14   13   15                                                       
CONECT   15   14   11    9                                                  
CONECT   16   11                                                            
CONECT   17   12   20                                                       
CONECT   18   13   19                                                       
CONECT   19   18   24                                                       
CONECT   20   21   17   22   23                                             
CONECT   21   20                                                            
CONECT   22   20                                                            
CONECT   23   20                                                            
CONECT   24   25   19   26   27                                             
CONECT   25   24                                                            
CONECT   26   24   28                                                       
CONECT   27   24                                                            
CONECT   28   29   26   30   31                                             
CONECT   29   28                                                            
CONECT   30   28   42                                                       
CONECT   31   28                                                            
CONECT   32   33   49                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36   48                                                  
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40   45                                                  
CONECT   40   39   41   46   47                                             
CONECT   41   40   42   43   44                                             
CONECT   42   41   30                                                       
CONECT   43   41                                                            
CONECT   44   41                                                            
CONECT   45   39                                                            
CONECT   46   40                                                            
CONECT   47   40                                                            
CONECT   48   35                                                            
CONECT   49   32   51                                                       
CONECT   50   51   56                                                       
CONECT   51   50   49   52                                                  
CONECT   52   51                                                            
CONECT   53   54   61                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   50                                                       
CONECT   57   58   61                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60   62                                                  
CONECT   60   59   61   63                                                  
CONECT   61   60   57   53                                                  
CONECT   62   59                                                            
CONECT   63   60   64                                                       
CONECT   64   63   65                                                       
CONECT   65   64   66                                                       
CONECT   66   65   67                                                       
CONECT   67   66                                                            
MASTER        0    0    0    0    0    0    0    0   67    0  140    0
END
Download

3D PDB for HMDB0011114 (OPC6-CoA)

COMPND    HMDB0011114
HETATM    1  C1  UNL     1      15.582   3.367   1.776  1.00  0.00           C  
HETATM    2  C2  UNL     1      14.593   2.242   1.410  1.00  0.00           C  
HETATM    3  C3  UNL     1      14.852   1.736   0.060  1.00  0.00           C  
HETATM    4  C4  UNL     1      15.170   0.484  -0.201  1.00  0.00           C  
HETATM    5  C5  UNL     1      15.327  -0.611   0.721  1.00  0.00           C  
HETATM    6  C6  UNL     1      14.513  -1.830   0.544  1.00  0.00           C  
HETATM    7  C7  UNL     1      14.732  -2.472  -0.783  1.00  0.00           C  
HETATM    8  O1  UNL     1      15.772  -2.496  -1.381  1.00  0.00           O  
HETATM    9  C8  UNL     1      13.446  -3.062  -1.216  1.00  0.00           C  
HETATM   10  C9  UNL     1      12.615  -3.112   0.077  1.00  0.00           C  
HETATM   11  C10 UNL     1      13.054  -1.821   0.722  1.00  0.00           C  
HETATM   12  C11 UNL     1      12.287  -0.674   0.183  1.00  0.00           C  
HETATM   13  C12 UNL     1      10.786  -0.893   0.443  1.00  0.00           C  
HETATM   14  C13 UNL     1      10.055   0.350  -0.055  1.00  0.00           C  
HETATM   15  C14 UNL     1       8.577   0.282   0.100  1.00  0.00           C  
HETATM   16  C15 UNL     1       7.925  -0.841  -0.689  1.00  0.00           C  
HETATM   17  C16 UNL     1       8.164  -0.698  -2.130  1.00  0.00           C  
HETATM   18  O2  UNL     1       9.171  -1.261  -2.593  1.00  0.00           O  
HETATM   19  S1  UNL     1       7.173   0.194  -3.278  1.00  0.00           S  
HETATM   20  C17 UNL     1       5.636   0.827  -2.625  1.00  0.00           C  
HETATM   21  C18 UNL     1       4.584  -0.205  -2.358  1.00  0.00           C  
HETATM   22  N1  UNL     1       3.405   0.453  -1.798  1.00  0.00           N  
HETATM   23  C19 UNL     1       2.228  -0.252  -1.485  1.00  0.00           C  
HETATM   24  O3  UNL     1       2.193  -1.484  -1.709  1.00  0.00           O  
HETATM   25  C20 UNL     1       1.051   0.450  -0.899  1.00  0.00           C  
HETATM   26  C21 UNL     1      -0.105  -0.488  -0.857  1.00  0.00           C  
HETATM   27  N2  UNL     1      -1.264   0.157  -0.243  1.00  0.00           N  
HETATM   28  C22 UNL     1      -1.203   0.571   1.091  1.00  0.00           C  
HETATM   29  O4  UNL     1      -0.108   0.363   1.727  1.00  0.00           O  
HETATM   30  C23 UNL     1      -2.314   1.226   1.788  1.00  0.00           C  
HETATM   31  O5  UNL     1      -1.810   1.754   3.013  1.00  0.00           O  
HETATM   32  C24 UNL     1      -3.410   0.258   2.111  1.00  0.00           C  
HETATM   33  C25 UNL     1      -2.928  -0.881   2.991  1.00  0.00           C  
HETATM   34  C26 UNL     1      -4.422   1.031   2.964  1.00  0.00           C  
HETATM   35  C27 UNL     1      -4.172  -0.262   0.928  1.00  0.00           C  
HETATM   36  O6  UNL     1      -4.725   0.808   0.278  1.00  0.00           O  
HETATM   37  P1  UNL     1      -5.653   0.454  -1.065  1.00  0.00           P  
HETATM   38  O7  UNL     1      -5.265   1.478  -2.140  1.00  0.00           O  
HETATM   39  O8  UNL     1      -5.344  -1.071  -1.721  1.00  0.00           O  
HETATM   40  O9  UNL     1      -7.300   0.717  -0.778  1.00  0.00           O  
HETATM   41  P2  UNL     1      -8.294  -0.356  -1.609  1.00  0.00           P  
HETATM   42  O10 UNL     1      -8.453   0.178  -3.032  1.00  0.00           O  
HETATM   43  O11 UNL     1      -7.682  -1.907  -1.713  1.00  0.00           O  
HETATM   44  O12 UNL     1      -9.862  -0.363  -0.944  1.00  0.00           O  
HETATM   45  C28 UNL     1      -9.808  -0.517   0.430  1.00  0.00           C  
HETATM   46  C29 UNL     1     -11.135  -0.513   1.096  1.00  0.00           C  
HETATM   47  O13 UNL     1     -11.849   0.661   0.905  1.00  0.00           O  
HETATM   48  C30 UNL     1     -13.062   0.390   1.506  1.00  0.00           C  
HETATM   49  N3  UNL     1     -14.112   1.237   0.964  1.00  0.00           N  
HETATM   50  C31 UNL     1     -15.445   1.066   0.960  1.00  0.00           C  
HETATM   51  N4  UNL     1     -16.037   2.098   0.349  1.00  0.00           N  
HETATM   52  C32 UNL     1     -15.086   2.972  -0.061  1.00  0.00           C  
HETATM   53  C33 UNL     1     -15.137   4.172  -0.724  1.00  0.00           C  
HETATM   54  N5  UNL     1     -16.358   4.743  -1.129  1.00  0.00           N  
HETATM   55  N6  UNL     1     -13.972   4.796  -0.980  1.00  0.00           N  
HETATM   56  C34 UNL     1     -12.806   4.269  -0.604  1.00  0.00           C  
HETATM   57  N7  UNL     1     -12.766   3.093   0.044  1.00  0.00           N  
HETATM   58  C35 UNL     1     -13.886   2.407   0.338  1.00  0.00           C  
HETATM   59  C36 UNL     1     -13.395  -1.050   1.277  1.00  0.00           C  
HETATM   60  O14 UNL     1     -13.568  -1.705   2.495  1.00  0.00           O  
HETATM   61  C37 UNL     1     -12.107  -1.544   0.597  1.00  0.00           C  
HETATM   62  O15 UNL     1     -12.259  -1.452  -0.778  1.00  0.00           O  
HETATM   63  P3  UNL     1     -12.159  -2.989  -1.436  1.00  0.00           P  
HETATM   64  O16 UNL     1     -12.669  -2.998  -2.864  1.00  0.00           O  
HETATM   65  O17 UNL     1     -10.544  -3.476  -1.415  1.00  0.00           O  
HETATM   66  O18 UNL     1     -13.121  -4.092  -0.574  1.00  0.00           O  
HETATM   67  H1  UNL     1      16.617   3.008   1.688  1.00  0.00           H  
HETATM   68  H2  UNL     1      15.399   4.260   1.129  1.00  0.00           H  
HETATM   69  H3  UNL     1      15.415   3.694   2.820  1.00  0.00           H  
HETATM   70  H4  UNL     1      13.602   2.796   1.345  1.00  0.00           H  
HETATM   71  H5  UNL     1      14.465   1.523   2.200  1.00  0.00           H  
HETATM   72  H6  UNL     1      14.764   2.486  -0.758  1.00  0.00           H  
HETATM   73  H7  UNL     1      15.331   0.267  -1.277  1.00  0.00           H  
HETATM   74  H8  UNL     1      15.143  -0.248   1.774  1.00  0.00           H  
HETATM   75  H9  UNL     1      16.412  -0.969   0.793  1.00  0.00           H  
HETATM   76  H10 UNL     1      14.896  -2.636   1.276  1.00  0.00           H  
HETATM   77  H11 UNL     1      13.561  -4.078  -1.653  1.00  0.00           H  
HETATM   78  H12 UNL     1      12.907  -2.441  -1.946  1.00  0.00           H  
HETATM   79  H13 UNL     1      11.559  -3.234  -0.091  1.00  0.00           H  
HETATM   80  H14 UNL     1      13.036  -3.994   0.636  1.00  0.00           H  
HETATM   81  H15 UNL     1      12.807  -1.956   1.838  1.00  0.00           H  
HETATM   82  H16 UNL     1      12.577   0.303   0.655  1.00  0.00           H  
HETATM   83  H17 UNL     1      12.380  -0.525  -0.907  1.00  0.00           H  
HETATM   84  H18 UNL     1      10.555  -1.175   1.461  1.00  0.00           H  
HETATM   85  H19 UNL     1      10.459  -1.705  -0.238  1.00  0.00           H  
HETATM   86  H20 UNL     1      10.288   0.472  -1.130  1.00  0.00           H  
HETATM   87  H21 UNL     1      10.419   1.270   0.452  1.00  0.00           H  
HETATM   88  H22 UNL     1       8.159   1.253  -0.214  1.00  0.00           H  
HETATM   89  H23 UNL     1       8.310   0.094   1.167  1.00  0.00           H  
HETATM   90  H24 UNL     1       8.316  -1.820  -0.324  1.00  0.00           H  
HETATM   91  H25 UNL     1       6.865  -0.817  -0.450  1.00  0.00           H  
HETATM   92  H26 UNL     1       5.887   1.374  -1.668  1.00  0.00           H  
HETATM   93  H27 UNL     1       5.186   1.607  -3.273  1.00  0.00           H  
HETATM   94  H28 UNL     1       4.240  -0.687  -3.321  1.00  0.00           H  
HETATM   95  H29 UNL     1       4.860  -1.003  -1.669  1.00  0.00           H  
HETATM   96  H30 UNL     1       3.436   1.479  -1.626  1.00  0.00           H  
HETATM   97  H31 UNL     1       1.380   0.848   0.072  1.00  0.00           H  
HETATM   98  H32 UNL     1       0.747   1.290  -1.594  1.00  0.00           H  
HETATM   99  H33 UNL     1      -0.336  -0.764  -1.920  1.00  0.00           H  
HETATM  100  H34 UNL     1       0.126  -1.409  -0.287  1.00  0.00           H  
HETATM  101  H35 UNL     1      -2.099   0.303  -0.831  1.00  0.00           H  
HETATM  102  H36 UNL     1      -2.718   2.055   1.195  1.00  0.00           H  
HETATM  103  H37 UNL     1      -2.086   1.227   3.780  1.00  0.00           H  
HETATM  104  H38 UNL     1      -2.900  -0.607   4.056  1.00  0.00           H  
HETATM  105  H39 UNL     1      -3.648  -1.737   2.897  1.00  0.00           H  
HETATM  106  H40 UNL     1      -1.960  -1.284   2.633  1.00  0.00           H  
HETATM  107  H41 UNL     1      -5.425   0.554   2.831  1.00  0.00           H  
HETATM  108  H42 UNL     1      -4.446   2.067   2.595  1.00  0.00           H  
HETATM  109  H43 UNL     1      -4.082   0.956   4.006  1.00  0.00           H  
HETATM  110  H44 UNL     1      -3.578  -0.957   0.348  1.00  0.00           H  
HETATM  111  H45 UNL     1      -5.066  -0.811   1.392  1.00  0.00           H  
HETATM  112  H46 UNL     1      -5.141  -1.743  -1.021  1.00  0.00           H  
HETATM  113  H47 UNL     1      -7.937  -2.301  -2.581  1.00  0.00           H  
HETATM  114  H48 UNL     1      -9.208   0.307   0.910  1.00  0.00           H  
HETATM  115  H49 UNL     1      -9.254  -1.445   0.631  1.00  0.00           H  
HETATM  116  H50 UNL     1     -11.018  -0.638   2.190  1.00  0.00           H  
HETATM  117  H51 UNL     1     -12.932   0.572   2.613  1.00  0.00           H  
HETATM  118  H52 UNL     1     -15.936   0.213   1.393  1.00  0.00           H  
HETATM  119  H53 UNL     1     -17.239   4.699  -0.562  1.00  0.00           H  
HETATM  120  H54 UNL     1     -16.366   5.235  -2.054  1.00  0.00           H  
HETATM  121  H55 UNL     1     -11.873   4.779  -0.815  1.00  0.00           H  
HETATM  122  H56 UNL     1     -14.244  -1.220   0.588  1.00  0.00           H  
HETATM  123  H57 UNL     1     -12.851  -1.341   3.106  1.00  0.00           H  
HETATM  124  H58 UNL     1     -11.943  -2.560   0.976  1.00  0.00           H  
HETATM  125  H59 UNL     1     -10.502  -4.414  -1.136  1.00  0.00           H  
HETATM  126  H60 UNL     1     -12.611  -4.380   0.227  1.00  0.00           H  
CONECT    1    2   67   68   69
CONECT    2    3   70   71
CONECT    3    4    4   72
CONECT    4    5   73
CONECT    5    6   74   75
CONECT    6    7   11   76
CONECT    7    8    8    9
CONECT    9   10   77   78
CONECT   10   11   79   80
CONECT   11   12   81
CONECT   12   13   82   83
CONECT   13   14   84   85
CONECT   14   15   86   87
CONECT   15   16   88   89
CONECT   16   17   90   91
CONECT   17   18   18   19
CONECT   19   20
CONECT   20   21   92   93
CONECT   21   22   94   95
CONECT   22   23   96
CONECT   23   24   24   25
CONECT   25   26   97   98
CONECT   26   27   99  100
CONECT   27   28  101
CONECT   28   29   29   30
CONECT   30   31   32  102
CONECT   31  103
CONECT   32   33   34   35
CONECT   33  104  105  106
CONECT   34  107  108  109
CONECT   35   36  110  111
CONECT   36   37
CONECT   37   38   38   39   40
CONECT   39  112
CONECT   40   41
CONECT   41   42   42   43   44
CONECT   43  113
CONECT   44   45
CONECT   45   46  114  115
CONECT   46   47   61  116
CONECT   47   48
CONECT   48   49   59  117
CONECT   49   50   58
CONECT   50   51   51  118
CONECT   51   52
CONECT   52   53   53   58
CONECT   53   54   55
CONECT   54  119  120
CONECT   55   56   56
CONECT   56   57  121
CONECT   57   58   58
CONECT   59   60   61  122
CONECT   60  123
CONECT   61   62  124
CONECT   62   63
CONECT   63   64   64   65   66
CONECT   65  125
CONECT   66  126
END
Download

SMILES for HMDB0011114 (OPC6-CoA)

CC\C=C/C[C@@H]1C(=O)CCC1CCCCCC(=O)SCCNC(=O)CCNC(=O)[C@@](O)([H])C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@H]1O[C@H](C(O)[C@H]1OP(=O)(O)O)N1C=NC2=C1N=CN=C2N
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INCHI for HMDB0011114 (OPC6-CoA)

InChI=1S/C37H60N7O18P3S/c1-4-5-7-11-24-23(13-14-25(24)45)10-8-6-9-12-28(47)66-18-17-39-27(46)15-16-40-35(50)32(49)37(2,3)20-59-65(56,57)62-64(54,55)58-19-26-31(61-63(51,52)53)30(48)36(60-26)44-22-43-29-33(38)41-21-42-34(29)44/h5,7,21-24,26,30-32,36,48-49H,4,6,8-20H2,1-3H3,(H,39,46)(H,40,50)(H,54,55)(H,56,57)(H2,38,41,42)(H2,51,52,53)/b7-5-/t23?,24-,26+,30?,31-,32-,36+/m0/s1
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Synonyms
ValueSource
(2R)-4-({[({[(2R,3R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-2-hydroxy-3,3-dimethyl-N-(2-{[2-({6-[(2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]hexanoyl}sulfanyl)ethyl]-C-hydroxycarbonimidoyl}ethyl)butanimidateGenerator
(2R)-4-({[({[(2R,3R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-2-hydroxy-3,3-dimethyl-N-(2-{[2-({6-[(2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]hexanoyl}sulphanyl)ethyl]-C-hydroxycarbonimidoyl}ethyl)butanimidateGenerator
(2R)-4-({[({[(2R,3R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-2-hydroxy-3,3-dimethyl-N-(2-{[2-({6-[(2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]hexanoyl}sulphanyl)ethyl]-C-hydroxycarbonimidoyl}ethyl)butanimidic acidGenerator
Chemical FormulaC37H60N7O18P3S
Average Molecular Weight1015.895
Monoisotopic Molecular Weight1015.292838377
IUPAC Name{[(2R,3R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-2,2-dimethyl-3-[(2-{[2-({6-[(2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]hexanoyl}sulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]propoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid
Traditional Name[(2R,3R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-[({hydroxy[hydroxy(3R)-3-hydroxy-2,2-dimethyl-3-[(2-{[2-({6-[(2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]hexanoyl}sulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]propoxyphosphoryl]oxyphosphoryl}oxy)methyl]oxolan-3-yl]oxyphosphonic acid
CAS Registry NumberNot Available
SMILES
CC\C=C/C[C@@H]1C(=O)CCC1CCCCCC(=O)SCCNC(=O)CCNC(=O)[C@@](O)([H])C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@H]1O[C@H](C(O)[C@H]1OP(=O)(O)O)N1C=NC2=C1N=CN=C2N
InChI Identifier
InChI=1S/C37H60N7O18P3S/c1-4-5-7-11-24-23(13-14-25(24)45)10-8-6-9-12-28(47)66-18-17-39-27(46)15-16-40-35(50)32(49)37(2,3)20-59-65(56,57)62-64(54,55)58-19-26-31(61-63(51,52)53)30(48)36(60-26)44-22-43-29-33(38)41-21-42-34(29)44/h5,7,21-24,26,30-32,36,48-49H,4,6,8-20H2,1-3H3,(H,39,46)(H,40,50)(H,54,55)(H,56,57)(H2,38,41,42)(H2,51,52,53)/b7-5-/t23?,24-,26+,30?,31-,32-,36+/m0/s1
InChI KeyVWFUYQVGVAEVNH-ZAPFENOOSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 2,3,4-saturated fatty acyl coas. These are acyl-CoAs carrying a 2,3,4-saturated fatty acyl chain.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acyl thioesters
Direct Parent2,3,4-saturated fatty acyl CoAs
Alternative Parents
Substituents
  • Coenzyme a or derivatives
  • Purine ribonucleoside 3',5'-bisphosphate
  • Purine ribonucleoside bisphosphate
  • Purine ribonucleoside diphosphate
  • Ribonucleoside 3'-phosphate
  • Pentose phosphate
  • Pentose-5-phosphate
  • Beta amino acid or derivatives
  • Glycosyl compound
  • N-glycosyl compound
  • 6-aminopurine
  • Monosaccharide phosphate
  • Organic pyrophosphate
  • Pentose monosaccharide
  • Imidazopyrimidine
  • Purine
  • Monoalkyl phosphate
  • Aminopyrimidine
  • Alkyl phosphate
  • Imidolactam
  • Monosaccharide
  • N-acyl-amine
  • N-substituted imidazole
  • Organic phosphoric acid derivative
  • Pyrimidine
  • Fatty amide
  • Phosphoric acid ester
  • Tetrahydrofuran
  • Imidazole
  • Heteroaromatic compound
  • Azole
  • Cyclic ketone
  • Carbothioic s-ester
  • Secondary alcohol
  • Ketone
  • Carboxamide group
  • Thiocarboxylic acid ester
  • Amino acid or derivatives
  • Secondary carboxylic acid amide
  • Sulfenyl compound
  • Thiocarboxylic acid or derivatives
  • Organoheterocyclic compound
  • Azacycle
  • Oxacycle
  • Carboxylic acid derivative
  • Organosulfur compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic nitrogen compound
  • Primary amine
  • Organopnictogen compound
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility2.24 g/LALOGPS
logP1.51ALOGPS
logP-2.6ChemAxon
logS-2.7ALOGPS
pKa (Strongest Acidic)0.83ChemAxon
pKa (Strongest Basic)4.95ChemAxon
Physiological Charge-4ChemAxon
Hydrogen Acceptor Count18ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area380.7 ŲChemAxon
Rotatable Bond Count29ChemAxon
Refractivity236.52 m³·mol⁻¹ChemAxon
Polarizability97.32 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+272.64630932474
DeepCCS[M-H]-270.99330932474
DeepCCS[M-2H]-305.02830932474
DeepCCS[M+Na]+278.80330932474
AllCCS[M+H]+284.932859911
AllCCS[M+H-H2O]+285.532859911
AllCCS[M+NH4]+284.232859911
AllCCS[M+Na]+284.032859911
AllCCS[M-H]-283.732859911
AllCCS[M+Na-2H]-289.432859911
AllCCS[M+HCOO]-295.732859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.4.64 minutes32390414
Predicted by Siyang on May 30, 202212.9383 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20227.62 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid421.5 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2522.5 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid136.7 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid169.7 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid166.4 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid158.1 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid463.6 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid577.3 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)916.3 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid916.7 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid582.2 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid885.8 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid340.8 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid303.5 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate409.6 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA217.1 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water151.4 seconds40023050

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - OPC6-CoA 10V, Positive-QTOFsplash10-000i-2902010102-1e7352c55e1ebc9489b32017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - OPC6-CoA 20V, Positive-QTOFsplash10-000i-1914030000-7b38294131c979ebfa732017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - OPC6-CoA 40V, Positive-QTOFsplash10-000i-1900010000-b0109b0a597e34196b4d2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - OPC6-CoA 10V, Negative-QTOFsplash10-01rt-8982342502-549936bfcd8c66b1c2062017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - OPC6-CoA 20V, Negative-QTOFsplash10-001i-4921200000-2bac44b54bda7bea29632017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - OPC6-CoA 40V, Negative-QTOFsplash10-057i-5900000000-ae9a641b0813e6cd1f952017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - OPC6-CoA 10V, Negative-QTOFsplash10-03di-9000000000-52986f1b36014ccd01c12021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - OPC6-CoA 20V, Negative-QTOFsplash10-03di-8010201109-cd274f6ef6908c7b5ad52021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - OPC6-CoA 40V, Negative-QTOFsplash10-0571-8305902706-16d967100fd89e49401d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - OPC6-CoA 10V, Positive-QTOFsplash10-014j-5000000009-de2678bf61048e41b4c92021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - OPC6-CoA 20V, Positive-QTOFsplash10-000i-1200000009-c0ccfd8123f76e72441b2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - OPC6-CoA 40V, Positive-QTOFsplash10-0a4i-0001190000-ae551f666e16115b18a12021-09-23Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-29Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound53480660
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Enzymes

Enzyme Details
1. 3-ketoacyl-CoA thiolase, peroxisomal
General function:
Involved in transferase activity, transferring acyl groups other than amino-acyl groups
Specific function:
Not Available
Gene Name:
ACAA1
Uniprot ID:
P09110
Molecular weight:
34664.46
Reactions
OPC6-CoA + Acetyl-CoA → Coenzyme A + 3-Oxo-OPC8-CoAdetails
Enzyme Details
2. Peroxisomal acyl-coenzyme A oxidase 1
General function:
Involved in acyl-CoA dehydrogenase activity
Specific function:
Catalyzes the desaturation of acyl-CoAs to 2-trans-enoyl-CoAs. Isoform 1 shows highest activity against medium-chain fatty acyl-CoAs and activity decreases with increasing chain length. Isoform 2 is active against a much broader range of substrates and shows activity towards very long-chain acyl-CoAs. Isoform 2 is twice as active as isoform 1 against 16-hydroxy-palmitoyl-CoA and is 25% more active against 1,16-hexadecanodioyl-CoA.
Gene Name:
ACOX1
Uniprot ID:
Q15067
Molecular weight:
70135.205
Reactions
OPC6-CoA + FAD → trans-2-Enoyl-OPC6-CoA + FADHdetails
Enzyme Details
3. Peroxisomal acyl-coenzyme A oxidase 3
General function:
Involved in oxidoreductase activity, acting on the CH-CH group of donors
Specific function:
Oxidizes the CoA-esters of 2-methyl-branched fatty acids (By similarity).
Gene Name:
ACOX3
Uniprot ID:
O15254
Molecular weight:
69574.075
Reactions
OPC6-CoA + FAD → trans-2-Enoyl-OPC6-CoA + FADHdetails