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Record Information

Version

5.0

Status

Detected and Quantified

Creation Date

2007-06-28 14:45:54 UTC

Update Date

2021-09-14 15:40:24 UTC

HMDB ID

HMDB0006706

Secondary Accession Numbers

HMDB0001995
HMDB01995
HMDB06706

Metabolite Identification

Common Name

Lacto-N-fucopentaose V

Description

Lacto-N-fucopentaose V is an oligosaccharide found in human milk and other biofluids. Oligosaccharides in human milk represent a group of bioactive molecules that have evolved to be an abundant and diverse component of human milk, even though they have no direct nutritive value to the infant. A recent hypothesis proposes that they could be substrates for the development of the intestinal microflora and the mucosal immune system. Oligosaccharides of the blood group family decorate diverse glycoproteins and glycolipids on the surface of cells. (PMID: 17002410 , 16954962 , 1802622 , 3927775 , 6638472 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv0541 02231220492D          

 58 61  0  0  1  0            999 V2000
   18.2451   -5.4959    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.5306   -6.7334    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.3871   -5.4959    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.3885   -6.7334    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.6741   -7.9710    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.6727   -6.7334    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.3871   -7.1459    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.2451   -7.1459    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.6741   -4.6710    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.1029   -9.6210    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.9583   -4.6710    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5293   -5.4959    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.3885  -10.8584    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.5306   -8.3835    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5293   -7.1459    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.8175   -5.9084    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.1029   -7.1459    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.5319  -10.4460    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.5319  -12.0960    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.2438   -8.3835    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.1029  -12.9210    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.6741  -10.4460    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.2451   -4.6710    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.5319   -7.9710    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.9595   -8.3835    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.8161   -4.6710    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   16.1017   -5.9084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8161   -5.4959    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   17.5306   -5.9084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9595   -5.9084    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   16.1017   -6.7334    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.8161   -7.1459    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   18.9595   -6.7334    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   19.6741   -5.4959    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   19.6741   -7.1459    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   20.3885   -5.9084    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.6727   -5.9084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9583   -5.4959    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   13.2438   -5.9084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8161   -7.9710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2438   -6.7334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.3885   -8.3835    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   13.9583   -7.1459    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   20.3885   -9.2084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.1029   -5.4959    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.1029   -7.9710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.1029  -10.4460    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   21.8175  -10.8584    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   17.5306   -4.2585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9583   -7.9710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.8175  -11.6834    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.1029  -12.0960    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.6741   -9.6210    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   20.3885  -11.6834    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   21.8175   -8.3835    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5306   -3.4335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.6741  -12.0960    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9595   -9.2084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1 29  1  6  0  0  0
 30  1  1  1  0  0  0
  2 29  1  0  0  0  0
  2 32  1  0  0  0  0
  3 27  1  6  0  0  0
  3 37  1  6  0  0  0
  4 35  1  0  0  0  0
  4 36  1  0  0  0  0
 35  5  1  1  0  0  0
  5 42  1  0  0  0  0
  6 37  1  0  0  0  0
  6 43  1  0  0  0  0
 31  7  1  1  0  0  0
 33  8  1  6  0  0  0
 34  9  1  1  0  0  0
 10 44  1  6  0  0  0
 47 10  1  1  0  0  0
 38 11  1  1  0  0  0
 12 39  1  6  0  0  0
 13 47  1  0  0  0  0
 13 54  1  0  0  0  0
 14 40  1  0  0  0  0
 15 41  1  6  0  0  0
 16 45  1  0  0  0  0
 17 46  1  6  0  0  0
 48 18  1  1  0  0  0
 19 51  1  6  0  0  0
 20 50  1  0  0  0  0
 21 52  1  6  0  0  0
 53 22  1  1  0  0  0
 23 49  2  0  0  0  0
 24 55  1  0  0  0  0
 25 58  2  0  0  0  0
 28 26  1  1  0  0  0
 26 49  1  0  0  0  0
 27 28  1  0  0  0  0
 27 31  1  0  0  0  0
 28 29  1  0  0  0  0
 30 33  1  0  0  0  0
 30 34  1  0  0  0  0
 31 32  1  0  0  0  0
 32 40  1  6  0  0  0
 33 35  1  0  0  0  0
 34 36  1  0  0  0  0
 36 45  1  1  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 41  1  0  0  0  0
 41 43  1  0  0  0  0
 42 44  1  0  0  0  0
 42 46  1  6  0  0  0
 43 50  1  6  0  0  0
 44 53  1  0  0  0  0
 46 55  1  0  0  0  0
 47 48  1  0  0  0  0
 48 51  1  0  0  0  0
 49 56  1  0  0  0  0
 51 52  1  0  0  0  0
 52 54  1  0  0  0  0
 53 58  1  0  0  0  0
 54 57  1  6  0  0  0
M  END

HMDB0006706
     RDKit          3D
Lacto-N-fucopentaose V
113116  0  0  0  0  0  0  0  0999 V2000
   -2.6944    2.9527   -1.4472 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9733    1.5950   -0.8802 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2323    0.6890   -1.7286 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9416    1.3720    0.5164 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2115    0.0358    1.0878 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1026   -0.3717    1.9487 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4271   -1.4698    1.3950 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0926   -1.2670    1.1783 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7736   -2.3197    1.8471 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5604   -3.5378    1.2327 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2108   -1.9079    1.6239 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1861   -2.6550    2.4748 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8730   -2.4314    3.8014 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4433   -2.0730    0.2555 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7277   -1.0002   -0.3916 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2766   -0.9855   -1.6573 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1483    0.0723   -1.8524 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8990    0.8195   -3.0921 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9649    0.0910   -4.2819 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6534    1.6550   -3.1647 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4904    0.9749   -3.3760 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5619   -0.5135   -1.7954 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5841    0.3329   -1.9701 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3952    0.5984   -0.8964 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.5198    1.9416   -0.5677 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1030    2.0187    0.7051 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.2143    1.3718    1.7492 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4626    1.3487    0.7473 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3622    0.1110    1.4134 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.8546    1.0326   -0.6906 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8229    2.2402   -1.3935 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7834    0.0914   -1.2280 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.9839   -0.0378   -2.5862 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6122   -1.8288   -2.5213 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6978   -1.7501   -3.8858 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7857   -2.6531   -2.0536 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9027   -2.8507   -0.8344 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2980   -1.3185   -0.3161 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5332   -0.5428   -1.0635 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4140   -0.7675    3.2488 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4548   -0.0664    3.7932 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5897   -0.4860    5.2455 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8402   -1.8667    5.2376 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6975   -0.4976    2.9996 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.7619    0.0119    3.7478 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5881    0.1015    1.6434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4494   -0.4591    0.7126 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3875    0.3646    0.1654 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2421    0.3364   -1.2158 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2319    0.9696   -1.9136 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.2370    2.4667   -1.7436 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2936    2.9640   -2.5049 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6101    0.3680   -1.6382 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1843   -0.1709   -2.7813 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3745   -0.7889   -0.6723 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3367   -1.5578   -1.2399 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7509   -0.1591    0.5743 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.6425   -1.1177    1.5813 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6391    3.0874   -1.7251 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9648    3.7271   -0.7203 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3148    3.1154   -2.3665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7243    2.1671    1.1463 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2607   -0.6856    0.2078 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3117    0.4365    1.9916 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1761   -0.2399    1.4983 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5286   -2.4355    2.9208 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6871   -4.2653    1.9133 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2610   -0.7989    1.7963 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1662   -3.7094    2.1817 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1962   -2.2656    2.2425 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1113   -1.4981    4.0326 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9846   -0.1076    0.2226 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0321    0.7059   -0.9093 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7668    1.5807   -3.2631 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9353    0.7643   -5.0127 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7643    2.4182   -3.9852 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6078    2.2746   -2.2309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1909    1.6032   -3.7476 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6357   -0.8273   -0.6928 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0995    0.0638    0.0288 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2337    3.0843    0.9721 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3054    1.9584    2.6903 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5458    0.3392    1.9949 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1581    1.4304    1.4273 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2183    1.9797    1.2246 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1638   -0.0085    2.0001 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8121    0.5117   -0.7624 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0829    3.0127   -0.8080 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9907   -0.9045   -0.7609 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7867   -0.5201   -2.8338 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7202   -2.4585   -2.2081 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5951   -1.9793   -4.2261 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4961   -3.0573   -2.7316 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1563   -2.3830   -0.6405 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7325   -0.9970   -1.9192 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3521    1.0315    3.7160 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3430    0.0779    5.7951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6078   -0.3335    5.7241 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0313   -2.2926    4.8261 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7285   -1.5966    2.9023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0688   -0.7063    4.3712 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9071    1.1891    1.7072 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3200    1.4039    0.5687 H   0  0  0  0  0  0  0  0  0  0  0  0
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 56111  1  0
 57112  1  1
 58113  1  0
M  END


  Mrv0541 02231220492D          

 58 61  0  0  1  0            999 V2000
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   18.2451   -7.1459    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   18.9595   -9.2084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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 35  5  1  1  0  0  0
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 31  7  1  1  0  0  0
 33  8  1  6  0  0  0
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M  END
> <DATABASE_ID>
HMDB0006706

> <DATABASE_NAME>
hmdb

> <SMILES>
C[C@@H]1O[C@@H](OC([C@@H](O)C=O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](OC3O[C@H](CO)[C@@H](O)C(OC4O[C@H](CO)C(O)C(O)[C@H]4O)[C@H]3NC(C)=O)[C@H]2O)C(O)CO)[C@@H](O)C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1S/C32H55NO25/c1-8-16(42)20(46)22(48)30(51-8)55-25(10(40)3-34)26(11(41)4-35)56-32-24(50)28(19(45)14(7-38)54-32)58-29-15(33-9(2)39)27(18(44)13(6-37)52-29)57-31-23(49)21(47)17(43)12(5-36)53-31/h3,8,10-32,35-38,40-50H,4-7H2,1-2H3,(H,33,39)/t8-,10-,11?,12+,13+,14+,15+,16?,17?,18+,19-,20?,21?,22-,23+,24+,25?,26+,27?,28-,29?,30-,31?,32-/m0/s1

> <INCHI_KEY>
TVVLIFCVJJSLBL-SEHWTJTBSA-N

> <FORMULA>
C32H55NO25

> <MOLECULAR_WEIGHT>
853.7708

> <EXACT_MASS>
853.306316315

> <JCHEM_ACCEPTOR_COUNT>
25

> <JCHEM_AVERAGE_POLARIZABILITY>
81.0442144068706

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
16

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
N-[(3R,5S,6R)-2-{[(2R,3S,4S,5R,6S)-3,5-dihydroxy-2-(hydroxymethyl)-6-{[(3R,5R)-1,2,5-trihydroxy-6-oxo-4-{[(2S,3S,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}hexan-3-yl]oxy}oxan-4-yl]oxy}-5-hydroxy-6-(hydroxymethyl)-4-{[(3R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl]acetamide

> <ALOGPS_LOGP>
-2.23

> <JCHEM_LOGP>
-9.892828372666663

> <ALOGPS_LOGS>
-0.92

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.71249389501138

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.370465382798178

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6765056448425852

> <JCHEM_POLAR_SURFACE_AREA>
423.46000000000004

> <JCHEM_REFRACTIVITY>
176.55639999999988

> <JCHEM_ROTATABLE_BOND_COUNT>
17

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.03e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
N-[(3R,5S,6R)-2-{[(2R,3S,4S,5R,6S)-3,5-dihydroxy-2-(hydroxymethyl)-6-{[(3R,5R)-1,2,5-trihydroxy-6-oxo-4-{[(2S,3S,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}hexan-3-yl]oxy}oxan-4-yl]oxy}-5-hydroxy-6-(hydroxymethyl)-4-{[(3R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl]acetamide

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0006706
     RDKit          3D
Lacto-N-fucopentaose V
113116  0  0  0  0  0  0  0  0999 V2000
   -2.6944    2.9527   -1.4472 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9733    1.5950   -0.8802 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2323    0.6890   -1.7286 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9416    1.3720    0.5164 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2115    0.0358    1.0878 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1026   -0.3717    1.9487 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4271   -1.4698    1.3950 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0926   -1.2670    1.1783 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7736   -2.3197    1.8471 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5604   -3.5378    1.2327 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2108   -1.9079    1.6239 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1861   -2.6550    2.4748 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8730   -2.4314    3.8014 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4433   -2.0730    0.2555 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7277   -1.0002   -0.3916 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2766   -0.9855   -1.6573 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1483    0.0723   -1.8524 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8990    0.8195   -3.0921 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9649    0.0910   -4.2819 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6534    1.6550   -3.1647 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4904    0.9749   -3.3760 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5619   -0.5135   -1.7954 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5841    0.3329   -1.9701 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3952    0.5984   -0.8964 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.5198    1.9416   -0.5677 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1030    2.0187    0.7051 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.2143    1.3718    1.7492 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4626    1.3487    0.7473 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3622    0.1110    1.4134 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.8546    1.0326   -0.6906 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8229    2.2402   -1.3935 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7834    0.0914   -1.2280 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.9839   -0.0378   -2.5862 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6122   -1.8288   -2.5213 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6978   -1.7501   -3.8858 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7857   -2.6531   -2.0536 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9027   -2.8507   -0.8344 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2980   -1.3185   -0.3161 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5332   -0.5428   -1.0635 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4140   -0.7675    3.2488 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4548   -0.0664    3.7932 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5897   -0.4860    5.2455 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8402   -1.8667    5.2376 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6975   -0.4976    2.9996 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.7619    0.0119    3.7478 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5881    0.1015    1.6434 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

HEADER    PROTEIN                                 23-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-FEB-12         0                                  
HETATM    1  O   UNK     0      34.058 -10.259   0.000  0.00  0.00           O+0
HETATM    2  O   UNK     0      32.724 -12.569   0.000  0.00  0.00           O+0
HETATM    3  O   UNK     0      28.723 -10.259   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0      38.059 -12.569   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      36.725 -14.879   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      27.389 -12.569   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0      28.723 -13.339   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0      34.058 -13.339   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      36.725  -8.719   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      39.392 -17.959   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      26.055  -8.719   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      23.388 -10.259   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      38.059 -20.269   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      32.724 -15.649   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      23.388 -13.339   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      40.726 -11.029   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      39.392 -13.339   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0      42.060 -19.499   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0      42.060 -22.579   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      24.722 -15.649   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0      39.392 -24.119   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      36.725 -19.499   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      34.058  -8.719   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      42.060 -14.879   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      35.391 -15.649   0.000  0.00  0.00           O+0
HETATM   26  N   UNK     0      31.390  -8.719   0.000  0.00  0.00           N+0
HETATM   27  C   UNK     0      30.057 -11.029   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      31.390 -10.259   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      32.724 -11.029   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      35.391 -11.029   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      30.057 -12.569   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      31.390 -13.339   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      35.391 -12.569   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      36.725 -10.259   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      36.725 -13.339   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      38.059 -11.029   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      27.389 -11.029   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      26.055 -10.259   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      24.722 -11.029   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      31.390 -14.879   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      24.722 -12.569   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      38.059 -15.649   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      26.055 -13.339   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      38.059 -17.189   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      39.392 -10.259   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      39.392 -14.879   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      39.392 -19.499   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      40.726 -20.269   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      32.724  -7.949   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      26.055 -14.879   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      40.726 -21.809   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      39.392 -22.579   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      36.725 -17.959   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      38.059 -21.809   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      40.726 -15.649   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      32.724  -6.409   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      36.725 -22.579   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      35.391 -17.189   0.000  0.00  0.00           C+0
CONECT    1   29   30                                                       
CONECT    2   29   32                                                       
CONECT    3   27   37                                                       
CONECT    4   35   36                                                       
CONECT    5   35   42                                                       
CONECT    6   37   43                                                       
CONECT    7   31                                                            
CONECT    8   33                                                            
CONECT    9   34                                                            
CONECT   10   44   47                                                       
CONECT   11   38                                                            
CONECT   12   39                                                            
CONECT   13   47   54                                                       
CONECT   14   40                                                            
CONECT   15   41                                                            
CONECT   16   45                                                            
CONECT   17   46                                                            
CONECT   18   48                                                            
CONECT   19   51                                                            
CONECT   20   50                                                            
CONECT   21   52                                                            
CONECT   22   53                                                            
CONECT   23   49                                                            
CONECT   24   55                                                            
CONECT   25   58                                                            
CONECT   26   28   49                                                       
CONECT   27    3   28   31                                                  
CONECT   28   26   27   29                                                  
CONECT   29    1    2   28                                                  
CONECT   30    1   33   34                                                  
CONECT   31    7   27   32                                                  
CONECT   32    2   31   40                                                  
CONECT   33    8   30   35                                                  
CONECT   34    9   30   36                                                  
CONECT   35    4    5   33                                                  
CONECT   36    4   34   45                                                  
CONECT   37    3    6   38                                                  
CONECT   38   11   37   39                                                  
CONECT   39   12   38   41                                                  
CONECT   40   14   32                                                       
CONECT   41   15   39   43                                                  
CONECT   42    5   44   46                                                  
CONECT   43    6   41   50                                                  
CONECT   44   10   42   53                                                  
CONECT   45   16   36                                                       
CONECT   46   17   42   55                                                  
CONECT   47   10   13   48                                                  
CONECT   48   18   47   51                                                  
CONECT   49   23   26   56                                                  
CONECT   50   20   43                                                       
CONECT   51   19   48   52                                                  
CONECT   52   21   51   54                                                  
CONECT   53   22   44   58                                                  
CONECT   54   13   52   57                                                  
CONECT   55   24   46                                                       
CONECT   56   49                                                            
CONECT   57   54                                                            
CONECT   58   25   53                                                       
MASTER        0    0    0    0    0    0    0    0   58    0  122    0
END

COMPND    HMDB0006706
HETATM    1  C1  UNL     1      -2.694   2.953  -1.447  1.00  0.00           C  
HETATM    2  C2  UNL     1      -2.973   1.595  -0.880  1.00  0.00           C  
HETATM    3  O1  UNL     1      -3.232   0.689  -1.729  1.00  0.00           O  
HETATM    4  N1  UNL     1      -2.942   1.372   0.516  1.00  0.00           N  
HETATM    5  C3  UNL     1      -3.211   0.036   1.088  1.00  0.00           C  
HETATM    6  C4  UNL     1      -2.103  -0.372   1.949  1.00  0.00           C  
HETATM    7  O2  UNL     1      -1.427  -1.470   1.395  1.00  0.00           O  
HETATM    8  C5  UNL     1      -0.093  -1.267   1.178  1.00  0.00           C  
HETATM    9  C6  UNL     1       0.774  -2.320   1.847  1.00  0.00           C  
HETATM   10  O3  UNL     1       0.560  -3.538   1.233  1.00  0.00           O  
HETATM   11  C7  UNL     1       2.211  -1.908   1.624  1.00  0.00           C  
HETATM   12  C8  UNL     1       3.186  -2.655   2.475  1.00  0.00           C  
HETATM   13  O4  UNL     1       2.873  -2.431   3.801  1.00  0.00           O  
HETATM   14  O5  UNL     1       2.443  -2.073   0.255  1.00  0.00           O  
HETATM   15  C9  UNL     1       1.728  -1.000  -0.392  1.00  0.00           C  
HETATM   16  O6  UNL     1       2.277  -0.986  -1.657  1.00  0.00           O  
HETATM   17  C10 UNL     1       3.148   0.072  -1.852  1.00  0.00           C  
HETATM   18  C11 UNL     1       2.899   0.820  -3.092  1.00  0.00           C  
HETATM   19  O7  UNL     1       2.965   0.091  -4.282  1.00  0.00           O  
HETATM   20  C12 UNL     1       1.653   1.655  -3.165  1.00  0.00           C  
HETATM   21  O8  UNL     1       0.490   0.975  -3.376  1.00  0.00           O  
HETATM   22  C13 UNL     1       4.562  -0.514  -1.795  1.00  0.00           C  
HETATM   23  O9  UNL     1       5.584   0.333  -1.970  1.00  0.00           O  
HETATM   24  C14 UNL     1       6.395   0.598  -0.896  1.00  0.00           C  
HETATM   25  O10 UNL     1       6.520   1.942  -0.568  1.00  0.00           O  
HETATM   26  C15 UNL     1       7.103   2.019   0.705  1.00  0.00           C  
HETATM   27  C16 UNL     1       6.214   1.372   1.749  1.00  0.00           C  
HETATM   28  C17 UNL     1       8.463   1.349   0.747  1.00  0.00           C  
HETATM   29  O11 UNL     1       8.362   0.111   1.413  1.00  0.00           O  
HETATM   30  C18 UNL     1       8.855   1.033  -0.691  1.00  0.00           C  
HETATM   31  O12 UNL     1       8.823   2.240  -1.393  1.00  0.00           O  
HETATM   32  C19 UNL     1       7.783   0.091  -1.228  1.00  0.00           C  
HETATM   33  O13 UNL     1       7.984  -0.038  -2.586  1.00  0.00           O  
HETATM   34  C20 UNL     1       4.612  -1.829  -2.521  1.00  0.00           C  
HETATM   35  O14 UNL     1       4.698  -1.750  -3.886  1.00  0.00           O  
HETATM   36  C21 UNL     1       5.786  -2.653  -2.054  1.00  0.00           C  
HETATM   37  O15 UNL     1       5.903  -2.851  -0.834  1.00  0.00           O  
HETATM   38  C22 UNL     1       0.298  -1.319  -0.316  1.00  0.00           C  
HETATM   39  O16 UNL     1      -0.533  -0.543  -1.063  1.00  0.00           O  
HETATM   40  O17 UNL     1      -2.414  -0.768   3.249  1.00  0.00           O  
HETATM   41  C23 UNL     1      -3.455  -0.066   3.793  1.00  0.00           C  
HETATM   42  C24 UNL     1      -3.590  -0.486   5.246  1.00  0.00           C  
HETATM   43  O18 UNL     1      -3.840  -1.867   5.238  1.00  0.00           O  
HETATM   44  C25 UNL     1      -4.698  -0.498   3.000  1.00  0.00           C  
HETATM   45  O19 UNL     1      -5.762   0.012   3.748  1.00  0.00           O  
HETATM   46  C26 UNL     1      -4.588   0.101   1.643  1.00  0.00           C  
HETATM   47  O20 UNL     1      -5.449  -0.459   0.713  1.00  0.00           O  
HETATM   48  C27 UNL     1      -6.387   0.365   0.165  1.00  0.00           C  
HETATM   49  O21 UNL     1      -6.242   0.336  -1.216  1.00  0.00           O  
HETATM   50  C28 UNL     1      -7.232   0.970  -1.914  1.00  0.00           C  
HETATM   51  C29 UNL     1      -7.237   2.467  -1.744  1.00  0.00           C  
HETATM   52  O22 UNL     1      -8.294   2.964  -2.505  1.00  0.00           O  
HETATM   53  C30 UNL     1      -8.610   0.368  -1.638  1.00  0.00           C  
HETATM   54  O23 UNL     1      -9.184  -0.171  -2.781  1.00  0.00           O  
HETATM   55  C31 UNL     1      -8.375  -0.789  -0.672  1.00  0.00           C  
HETATM   56  O24 UNL     1      -7.337  -1.558  -1.240  1.00  0.00           O  
HETATM   57  C32 UNL     1      -7.751  -0.159   0.574  1.00  0.00           C  
HETATM   58  O25 UNL     1      -7.642  -1.118   1.581  1.00  0.00           O  
HETATM   59  H1  UNL     1      -1.639   3.087  -1.725  1.00  0.00           H  
HETATM   60  H2  UNL     1      -2.965   3.727  -0.720  1.00  0.00           H  
HETATM   61  H3  UNL     1      -3.315   3.115  -2.367  1.00  0.00           H  
HETATM   62  H4  UNL     1      -2.724   2.167   1.146  1.00  0.00           H  
HETATM   63  H5  UNL     1      -3.261  -0.686   0.208  1.00  0.00           H  
HETATM   64  H6  UNL     1      -1.312   0.436   1.992  1.00  0.00           H  
HETATM   65  H7  UNL     1       0.176  -0.240   1.498  1.00  0.00           H  
HETATM   66  H8  UNL     1       0.529  -2.435   2.921  1.00  0.00           H  
HETATM   67  H9  UNL     1       0.687  -4.265   1.913  1.00  0.00           H  
HETATM   68  H10 UNL     1       2.261  -0.799   1.796  1.00  0.00           H  
HETATM   69  H11 UNL     1       3.166  -3.709   2.182  1.00  0.00           H  
HETATM   70  H12 UNL     1       4.196  -2.266   2.242  1.00  0.00           H  
HETATM   71  H13 UNL     1       3.111  -1.498   4.033  1.00  0.00           H  
HETATM   72  H14 UNL     1       1.985  -0.108   0.223  1.00  0.00           H  
HETATM   73  H15 UNL     1       3.032   0.706  -0.909  1.00  0.00           H  
HETATM   74  H16 UNL     1       3.767   1.581  -3.263  1.00  0.00           H  
HETATM   75  H17 UNL     1       2.935   0.764  -5.013  1.00  0.00           H  
HETATM   76  H18 UNL     1       1.764   2.418  -3.985  1.00  0.00           H  
HETATM   77  H19 UNL     1       1.608   2.275  -2.231  1.00  0.00           H  
HETATM   78  H20 UNL     1      -0.191   1.603  -3.748  1.00  0.00           H  
HETATM   79  H21 UNL     1       4.636  -0.827  -0.693  1.00  0.00           H  
HETATM   80  H22 UNL     1       6.100   0.064   0.029  1.00  0.00           H  
HETATM   81  H23 UNL     1       7.234   3.084   0.972  1.00  0.00           H  
HETATM   82  H24 UNL     1       6.305   1.958   2.690  1.00  0.00           H  
HETATM   83  H25 UNL     1       6.546   0.339   1.995  1.00  0.00           H  
HETATM   84  H26 UNL     1       5.158   1.430   1.427  1.00  0.00           H  
HETATM   85  H27 UNL     1       9.218   1.980   1.225  1.00  0.00           H  
HETATM   86  H28 UNL     1       9.164  -0.008   2.000  1.00  0.00           H  
HETATM   87  H29 UNL     1       9.812   0.512  -0.762  1.00  0.00           H  
HETATM   88  H30 UNL     1       9.083   3.013  -0.808  1.00  0.00           H  
HETATM   89  H31 UNL     1       7.991  -0.905  -0.761  1.00  0.00           H  
HETATM   90  H32 UNL     1       8.787  -0.520  -2.834  1.00  0.00           H  
HETATM   91  H33 UNL     1       3.720  -2.458  -2.208  1.00  0.00           H  
HETATM   92  H34 UNL     1       5.595  -1.979  -4.226  1.00  0.00           H  
HETATM   93  H35 UNL     1       6.496  -3.057  -2.732  1.00  0.00           H  
HETATM   94  H36 UNL     1       0.156  -2.383  -0.640  1.00  0.00           H  
HETATM   95  H37 UNL     1      -0.732  -0.997  -1.919  1.00  0.00           H  
HETATM   96  H38 UNL     1      -3.352   1.031   3.716  1.00  0.00           H  
HETATM   97  H39 UNL     1      -4.343   0.078   5.795  1.00  0.00           H  
HETATM   98  H40 UNL     1      -2.608  -0.334   5.724  1.00  0.00           H  
HETATM   99  H41 UNL     1      -3.031  -2.293   4.826  1.00  0.00           H  
HETATM  100  H42 UNL     1      -4.728  -1.597   2.902  1.00  0.00           H  
HETATM  101  H43 UNL     1      -6.069  -0.706   4.371  1.00  0.00           H  
HETATM  102  H44 UNL     1      -4.907   1.189   1.707  1.00  0.00           H  
HETATM  103  H45 UNL     1      -6.320   1.404   0.569  1.00  0.00           H  
HETATM  104  H46 UNL     1      -7.036   0.784  -2.999  1.00  0.00           H  
HETATM  105  H47 UNL     1      -6.302   2.860  -2.185  1.00  0.00           H  
HETATM  106  H48 UNL     1      -7.259   2.784  -0.693  1.00  0.00           H  
HETATM  107  H49 UNL     1      -8.925   2.257  -2.795  1.00  0.00           H  
HETATM  108  H50 UNL     1      -9.273   1.084  -1.153  1.00  0.00           H  
HETATM  109  H51 UNL     1      -9.769  -0.935  -2.600  1.00  0.00           H  
HETATM  110  H52 UNL     1      -9.276  -1.361  -0.460  1.00  0.00           H  
HETATM  111  H53 UNL     1      -7.608  -2.502  -1.373  1.00  0.00           H  
HETATM  112  H54 UNL     1      -8.402   0.645   0.976  1.00  0.00           H  
HETATM  113  H55 UNL     1      -7.727  -2.018   1.182  1.00  0.00           H  
CONECT    1    2   59   60   61
CONECT    2    3    3    4
CONECT    4    5   62
CONECT    5    6   46   63
CONECT    6    7   40   64
CONECT    7    8
CONECT    8    9   38   65
CONECT    9   10   11   66
CONECT   10   67
CONECT   11   12   14   68
CONECT   12   13   69   70
CONECT   13   71
CONECT   14   15
CONECT   15   16   38   72
CONECT   16   17
CONECT   17   18   22   73
CONECT   18   19   20   74
CONECT   19   75
CONECT   20   21   76   77
CONECT   21   78
CONECT   22   23   34   79
CONECT   23   24
CONECT   24   25   32   80
CONECT   25   26
CONECT   26   27   28   81
CONECT   27   82   83   84
CONECT   28   29   30   85
CONECT   29   86
CONECT   30   31   32   87
CONECT   31   88
CONECT   32   33   89
CONECT   33   90
CONECT   34   35   36   91
CONECT   35   92
CONECT   36   37   37   93
CONECT   38   39   94
CONECT   39   95
CONECT   40   41
CONECT   41   42   44   96
CONECT   42   43   97   98
CONECT   43   99
CONECT   44   45   46  100
CONECT   45  101
CONECT   46   47  102
CONECT   47   48
CONECT   48   49   57  103
CONECT   49   50
CONECT   50   51   53  104
CONECT   51   52  105  106
CONECT   52  107
CONECT   53   54   55  108
CONECT   54  109
CONECT   55   56   57  110
CONECT   56  111
CONECT   57   58  112
CONECT   58  113
END

HMDB0006706
     RDKit          3D
Lacto-N-fucopentaose V
113116  0  0  0  0  0  0  0  0999 V2000
   -2.6944    2.9527   -1.4472 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9733    1.5950   -0.8802 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2323    0.6890   -1.7286 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9416    1.3720    0.5164 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2115    0.0358    1.0878 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1026   -0.3717    1.9487 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4271   -1.4698    1.3950 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0926   -1.2670    1.1783 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7736   -2.3197    1.8471 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5604   -3.5378    1.2327 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2108   -1.9079    1.6239 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1861   -2.6550    2.4748 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8730   -2.4314    3.8014 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4433   -2.0730    0.2555 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7277   -1.0002   -0.3916 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2766   -0.9855   -1.6573 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1483    0.0723   -1.8524 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8990    0.8195   -3.0921 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9649    0.0910   -4.2819 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6534    1.6550   -3.1647 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4904    0.9749   -3.3760 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5619   -0.5135   -1.7954 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5841    0.3329   -1.9701 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3952    0.5984   -0.8964 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.5198    1.9416   -0.5677 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1030    2.0187    0.7051 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.2143    1.3718    1.7492 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4626    1.3487    0.7473 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3622    0.1110    1.4134 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.8546    1.0326   -0.6906 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8229    2.2402   -1.3935 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7834    0.0914   -1.2280 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.9839   -0.0378   -2.5862 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6122   -1.8288   -2.5213 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6978   -1.7501   -3.8858 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7857   -2.6531   -2.0536 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9027   -2.8507   -0.8344 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2980   -1.3185   -0.3161 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5332   -0.5428   -1.0635 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4140   -0.7675    3.2488 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4548   -0.0664    3.7932 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5897   -0.4860    5.2455 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8402   -1.8667    5.2376 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6975   -0.4976    2.9996 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.7619    0.0119    3.7478 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5881    0.1015    1.6434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4494   -0.4591    0.7126 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3875    0.3646    0.1654 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2421    0.3364   -1.2158 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2319    0.9696   -1.9136 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.2370    2.4667   -1.7436 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2936    2.9640   -2.5049 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6101    0.3680   -1.6382 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1843   -0.1709   -2.7813 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3745   -0.7889   -0.6723 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3367   -1.5578   -1.2399 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7509   -0.1591    0.5743 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.6425   -1.1177    1.5813 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6391    3.0874   -1.7251 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9648    3.7271   -0.7203 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3148    3.1154   -2.3665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7243    2.1671    1.1463 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2607   -0.6856    0.2078 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3117    0.4365    1.9916 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1761   -0.2399    1.4983 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5286   -2.4355    2.9208 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6871   -4.2653    1.9133 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2610   -0.7989    1.7963 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1662   -3.7094    2.1817 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1962   -2.2656    2.2425 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1113   -1.4981    4.0326 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9846   -0.1076    0.2226 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0321    0.7059   -0.9093 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7668    1.5807   -3.2631 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9353    0.7643   -5.0127 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7643    2.4182   -3.9852 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6078    2.2746   -2.2309 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1909    1.6032   -3.7476 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6357   -0.8273   -0.6928 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0995    0.0638    0.0288 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2337    3.0843    0.9721 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3054    1.9584    2.6903 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5458    0.3392    1.9949 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1581    1.4304    1.4273 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2183    1.9797    1.2246 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1638   -0.0085    2.0001 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8121    0.5117   -0.7624 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0829    3.0127   -0.8080 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9907   -0.9045   -0.7609 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7867   -0.5201   -2.8338 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7202   -2.4585   -2.2081 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5951   -1.9793   -4.2261 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4961   -3.0573   -2.7316 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1563   -2.3830   -0.6405 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7325   -0.9970   -1.9192 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3521    1.0315    3.7160 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3430    0.0779    5.7951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6078   -0.3335    5.7241 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0313   -2.2926    4.8261 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7285   -1.5966    2.9023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0688   -0.7063    4.3712 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9071    1.1891    1.7072 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3200    1.4039    0.5687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0363    0.7835   -2.9992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3019    2.8602   -2.1851 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2595    2.7838   -0.6932 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9253    2.2570   -2.7952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2730    1.0838   -1.1530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7685   -0.9351   -2.6000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2757   -1.3608   -0.4600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6081   -2.5022   -1.3726 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4017    0.6449    0.9757 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7271   -2.0178    1.1825 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 11 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 17 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 26 28  1  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 30 32  1  0
 32 33  1  0
 22 34  1  0
 34 35  1  0
 34 36  1  0
 36 37  2  0
 15 38  1  0
 38 39  1  0
  6 40  1  0
 40 41  1  0
 41 42  1  0
 42 43  1  0
 41 44  1  0
 44 45  1  0
 44 46  1  0
 46 47  1  0
 47 48  1  0
 48 49  1  0
 49 50  1  0
 50 51  1  0
 51 52  1  0
 50 53  1  0
 53 54  1  0
 53 55  1  0
 55 56  1  0
 55 57  1  0
 57 58  1  0
 46  5  1  0
 57 48  1  0
 38  8  1  0
 32 24  1  0
  1 59  1  0
  1 60  1  0
  1 61  1  0
  4 62  1  0
  5 63  1  6
  6 64  1  0
  8 65  1  1
  9 66  1  1
 10 67  1  0
 11 68  1  1
 12 69  1  0
 12 70  1  0
 13 71  1  0
 15 72  1  1
 17 73  1  1
 18 74  1  0
 19 75  1  0
 20 76  1  0
 20 77  1  0
 21 78  1  0
 22 79  1  0
 24 80  1  1
 26 81  1  1
 27 82  1  0
 27 83  1  0
 27 84  1  0
 28 85  1  0
 29 86  1  0
 30 87  1  0
 31 88  1  0
 32 89  1  1
 33 90  1  0
 34 91  1  6
 35 92  1  0
 36 93  1  0
 38 94  1  6
 39 95  1  0
 41 96  1  1
 42 97  1  0
 42 98  1  0
 43 99  1  0
 44100  1  6
 45101  1  0
 46102  1  0
 48103  1  0
 50104  1  6
 51105  1  0
 51106  1  0
 52107  1  0
 53108  1  0
 54109  1  0
 55110  1  0
 56111  1  0
 57112  1  1
 58113  1  0
M  END

View in JSmol View NMR Assignments View Stereo Labels

Synonyms

Value	Source
LNFP V	HMDB
O-6-Deoxy-alpha-L-galactopyranosyl-(1->3)-O-[O-beta-D-galactopyranosyl-(1->3)-O-2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl-(1->3)-beta-D-galactopyranosyl-(1->4)]-D-glucose	HMDB
O-6-Deoxy-alpha-L-galactopyranosyl-(1->3)-O-[O-beta-delta-galactopyranosyl-(1->3)-O-2-(acetylamino)-2-deoxy-beta-delta-glucopyranosyl-(1->3)-beta-delta-galactopyranosyl-(1->4)]-delta-glucose	HMDB
N-[(3R,5S,6R)-2-{[(2R,3S,4S,5R,6S)-3,5-dihydroxy-2-(hydroxymethyl)-6-{[(3R,5R)-1,2,5-trihydroxy-6-oxo-4-{[(2S,3S,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}hexan-3-yl]oxy}oxan-4-yl]oxy}-5-hydroxy-6-(hydroxymethyl)-4-{[(3R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl]ethanimidate	Generator, HMDB

Chemical Formula

C₃₂H₅₅NO₂₅

Average Molecular Weight

853.7708

Monoisotopic Molecular Weight

853.306316315

IUPAC Name

N-[(3R,5S,6R)-2-{[(2R,3S,4S,5R,6S)-3,5-dihydroxy-2-(hydroxymethyl)-6-{[(3R,5R)-1,2,5-trihydroxy-6-oxo-4-{[(2S,3S,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}hexan-3-yl]oxy}oxan-4-yl]oxy}-5-hydroxy-6-(hydroxymethyl)-4-{[(3R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl]acetamide

Traditional Name

CAS Registry Number

60254-64-0

SMILES

C[C@@H]1O[C@@H](OC([C@@H](O)C=O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](OC3O[C@H](CO)[C@@H](O)C(OC4O[C@H](CO)C(O)C(O)[C@H]4O)[C@H]3NC(C)=O)[C@H]2O)C(O)CO)[C@@H](O)C(O)C1O

InChI Identifier

InChI=1S/C32H55NO25/c1-8-16(42)20(46)22(48)30(51-8)55-25(10(40)3-34)26(11(41)4-35)56-32-24(50)28(19(45)14(7-38)54-32)58-29-15(33-9(2)39)27(18(44)13(6-37)52-29)57-31-23(49)21(47)17(43)12(5-36)53-31/h3,8,10-32,35-38,40-50H,4-7H2,1-2H3,(H,33,39)/t8-,10-,11?,12+,13+,14+,15+,16?,17?,18+,19-,20?,21?,22-,23+,24+,25?,26+,27?,28-,29?,30-,31?,32-/m0/s1

InChI Key

TVVLIFCVJJSLBL-SEHWTJTBSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Oligosaccharides

Alternative Parents

Substituents

Oligosaccharide
Fatty acyl glycoside
N-acyl-alpha-hexosamine
Alkyl glycoside
Glycosyl compound
O-glycosyl compound
Oxane
Fatty acyl
Alpha-hydroxyaldehyde
Acetamide
Secondary carboxylic acid amide
Secondary alcohol
Carboxamide group
Organoheterocyclic compound
Polyol
Acetal
Oxacycle
Carboxylic acid derivative
Alcohol
Organic oxide
Organopnictogen compound
Hydrocarbon derivative
Organonitrogen compound
Carbonyl group
Organic nitrogen compound
Aldehyde
Primary alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Breast milk (PMID: 11787692)
Breast milk (HMDB: HMDB0006706)

Source

Endogenous

Endogenous (HMDB: HMDB0006706)

Pheasant (FooDB: FOOD00430)
Squab (FooDB: FOOD00481)
Turkey (FooDB: FOOD00494)
Quail (FooDB: FOOD00541)
Anatidae (FooDB: FOOD00576)
Rock ptarmigan (FooDB: FOOD00597)
Columbidae (Dove, Pigeon) (FooDB: FOOD00610)
Chicken (FooDB: FOOD00329)
Mallard duck (FooDB: FOOD00353)
Emu (FooDB: FOOD00360)
Greylag goose (FooDB: FOOD00368)
Guinea hen (FooDB: FOOD00373)
Ostrich (FooDB: FOOD00422)
Velvet duck (FooDB: FOOD00427)

Lagomorph

Ovis

Sheep (Mutton, Lamb) (FooDB: FOOD00473)

Bovine

Venison

Deer (FooDB: FOOD00524)
Mule deer (FooDB: FOOD00348)
Elk (FooDB: FOOD00359)

Caprae

Domestic goat (FooDB: FOOD00529)

Swine

Domestic pig (FooDB: FOOD00536)
Wild boar (FooDB: FOOD00307)

Equine

Horse (FooDB: FOOD00378)

Process

Not Available

Role

Not Available

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	103 g/L	ALOGPS
logP	-2.2	ALOGPS
logP	-9.9	ChemAxon
logS	-0.92	ALOGPS
pKa (Strongest Acidic)	11.37	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	25	ChemAxon
Hydrogen Donor Count	16	ChemAxon
Polar Surface Area	423.46 Å²	ChemAxon
Rotatable Bond Count	17	ChemAxon
Refractivity	176.56 m³·mol⁻¹	ChemAxon
Polarizability	81.04 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	250.27	30932474
DeepCCS	[M-H]-	248.546	30932474
DeepCCS	[M-2H]-	282.578	30932474
DeepCCS	[M+Na]+	256.475	30932474
AllCCS	[M+H]+	264.9	32859911
AllCCS	[M+H-H2O]+	265.2	32859911
AllCCS	[M+NH4]+	264.5	32859911
AllCCS	[M+Na]+	264.4	32859911
AllCCS	[M-H]-	268.4	32859911
AllCCS	[M+Na-2H]-	271.9	32859911
AllCCS	[M+HCOO]-	275.8	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	2.15 minutes	32390414
Predicted by Siyang on May 30, 2022	13.6673 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	7.76 minutes	32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid	580.7 seconds	40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	1030.2 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	258.0 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	33.2 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	228.5 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	105.1 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	442.5 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	383.0 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	1002.6 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	823.6 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	133.0 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1293.8 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	335.0 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	493.2 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	666.7 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	655.0 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	695.3 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Lacto-N-fucopentaose V	C[C@@H]1O[C@@H](OC([C@@H](O)C=O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](OC3O[C@H](CO)[C@@H](O)C(OC4O[C@H](CO)C(O)C(O)[C@H]4O)[C@H]3NC(C)=O)[C@H]2O)C(O)CO)[C@@H](O)C(O)C1O	4466.4	Standard polar	33892256
Lacto-N-fucopentaose V	C[C@@H]1O[C@@H](OC([C@@H](O)C=O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](OC3O[C@H](CO)[C@@H](O)C(OC4O[C@H](CO)C(O)C(O)[C@H]4O)[C@H]3NC(C)=O)[C@H]2O)C(O)CO)[C@@H](O)C(O)C1O	5800.3	Standard non polar	33892256
Lacto-N-fucopentaose V	C[C@@H]1O[C@@H](OC([C@@H](O)C=O)[C@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](OC3O[C@H](CO)[C@@H](O)C(OC4O[C@H](CO)C(O)C(O)[C@H]4O)[C@H]3NC(C)=O)[C@H]2O)C(O)CO)[C@@H](O)C(O)C1O	6708.9	Semi standard non polar	33892256

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lacto-N-fucopentaose V 10V, Positive-QTOF	splash10-05bo-0206019160-1cf40221a96632048fcc	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lacto-N-fucopentaose V 20V, Positive-QTOF	splash10-00bc-1709248110-27d941d00181852d2eed	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lacto-N-fucopentaose V 40V, Positive-QTOF	splash10-004l-2905043210-59309037b3944f5ad3ed	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lacto-N-fucopentaose V 10V, Negative-QTOF	splash10-00ai-4101133690-7ea3396adb4346ccbc7f	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lacto-N-fucopentaose V 20V, Negative-QTOF	splash10-001i-3505236490-1ec24f41e0812335bb19	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lacto-N-fucopentaose V 40V, Negative-QTOF	splash10-03mi-6956640000-7ccccd2f9860776ed127	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lacto-N-fucopentaose V 10V, Positive-QTOF	splash10-0006-0202009130-e13efce160be588e6abd	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lacto-N-fucopentaose V 20V, Positive-QTOF	splash10-002e-1900028020-e599bd9797b3c865da5f	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lacto-N-fucopentaose V 40V, Positive-QTOF	splash10-0005-9702011100-02cc82dedb7dbc1f44af	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lacto-N-fucopentaose V 10V, Negative-QTOF	splash10-0udi-1000000190-6421d314286c20adeaaf	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lacto-N-fucopentaose V 20V, Negative-QTOF	splash10-06xw-6900004520-295b158000ca63c6fec7	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Lacto-N-fucopentaose V 40V, Negative-QTOF	splash10-06vl-9700031100-1dbb2941f4bb84c06201	2021-09-24	Wishart Lab	View Spectrum

NMR Spectra

Spectrum Type	Description	Deposition Date	Source	View
Predicted 1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Breast Milk

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Breast Milk	Detected and Quantified	93.702(0-2647.082) uM	Adult (>18 years old)	Female	Normal	11787692	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB024035

KNApSAcK ID

Not Available

Chemspider ID

35016019

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53477884

PDB ID

Not Available

ChEBI ID

88778

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Koizumi, Satoshi; Sasaki, Katsutoshi; Endo, Tetsuo; Tabata, Kazuhiko; Ozaki, Akio. Processes for producing sugar nucleotides and complex carbohydrates. PCT Int. Appl. (1998), 119 pp.

Material Safety Data Sheet (MSDS)

Not Available

General References

Ninonuevo MR, Park Y, Yin H, Zhang J, Ward RE, Clowers BH, German JB, Freeman SL, Killeen K, Grimm R, Lebrilla CB: A strategy for annotating the human milk glycome. J Agric Food Chem. 2006 Oct 4;54(20):7471-80. [PubMed:17002410 ]
Musumeci M, Simpore J, D'Agata A, Sotgiu S, Musumeci S: Oligosaccharides in colostrum of Italian and Burkinabe women. J Pediatr Gastroenterol Nutr. 2006 Sep;43(3):372-8. [PubMed:16954962 ]
Lindenberg S: Experimental studies on the initial trophoblast endometrial interaction. Dan Med Bull. 1991 Oct;38(5):371-80. [PubMed:1802622 ]
Rosenfelder G, Morgelin M, Chang JY, Schonenberger CA, Braun DG, Towbin H: Chromogenic labeling of monosaccharides using 4'-N,N-dimethylamino-4-aminoazobenzene. Anal Biochem. 1985 May 15;147(1):156-65. [PubMed:3927775 ]
Dua VK, Bush CA: Identification and fractionation of human milk oligosaccharides by proton-nuclear magnetic resonance spectroscopy and reverse-phase high-performance liquid chromatography. Anal Biochem. 1983 Aug;133(1):1-8. [PubMed:6638472 ]

Showing metabocard for Lacto-N-fucopentaose V (HMDB0006706)

MOL for HMDB0006706 (Lacto-N-fucopentaose V)

3D MOL for HMDB0006706 (Lacto-N-fucopentaose V)

3D SDF for HMDB0006706 (Lacto-N-fucopentaose V)

3D-SDF for HMDB0006706 (Lacto-N-fucopentaose V)

PDB for HMDB0006706 (Lacto-N-fucopentaose V)

3D PDB for HMDB0006706 (Lacto-N-fucopentaose V)

SMILES for HMDB0006706 (Lacto-N-fucopentaose V)

INCHI for HMDB0006706 (Lacto-N-fucopentaose V)

Structure for HMDB0006706 (Lacto-N-fucopentaose V)

3D Structure for HMDB0006706 (Lacto-N-fucopentaose V)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

MS/MS Spectra

NMR Spectra