| Record Information |
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| Version | 5.0 |
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| Status | Detected and Quantified |
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| Creation Date | 2006-02-22 11:40:36 UTC |
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| Update Date | 2023-02-21 17:15:51 UTC |
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| HMDB ID | HMDB0001861 |
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| Secondary Accession Numbers | |
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| Metabolite Identification |
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| Common Name | 3-Methylhistamine |
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| Description | 3-Methylhistamine belongs to the class of organic compounds known as 2-arylethylamines. These are primary amines that have the general formula RCCNH2, where R is an organic group. 3-Methylhistamine has been detected, but not quantified in, a few different foods, such as anatidaes (Anatidae), chickens (Gallus gallus), and domestic pigs (Sus scrofa domestica). This could make 3-methylhistamine a potential biomarker for the consumption of these foods. Based on a literature review a small amount of articles have been published on 3-Methylhistamine. |
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| Structure | InChI=1S/C6H11N3/c1-9-5-8-4-6(9)2-3-7/h4-5H,2-3,7H2,1H3 |
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| Synonyms | | Value | Source |
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| L-Histamine deriv. 1 | HMDB | | N(T)-Methylhistamine | HMDB | | N(Tau)-methylhistamine | HMDB | | N-Tau-methylhistamine | HMDB, MeSH | | Tau-methylhistamine | HMDB, MeSH | | 3-Methylhistamine dihydrochloride | MeSH, HMDB | | 3-Methylhistamine | MeSH |
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| Chemical Formula | C6H11N3 |
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| Average Molecular Weight | 125.1716 |
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| Monoisotopic Molecular Weight | 125.095297367 |
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| IUPAC Name | 2-(1-methyl-1H-imidazol-5-yl)ethan-1-amine |
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| Traditional Name | 3-methylhistamine |
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| CAS Registry Number | 644-42-8 |
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| SMILES | CN1C=NC=C1CCN |
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| InChI Identifier | InChI=1S/C6H11N3/c1-9-5-8-4-6(9)2-3-7/h4-5H,2-3,7H2,1H3 |
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| InChI Key | CPAGZVLINCPJEH-UHFFFAOYSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as 2-arylethylamines. These are primary amines that have the general formula RCCNH2, where R is an organic group. |
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| Kingdom | Organic compounds |
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| Super Class | Organic nitrogen compounds |
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| Class | Organonitrogen compounds |
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| Sub Class | Amines |
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| Direct Parent | 2-arylethylamines |
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| Alternative Parents | |
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| Substituents | - 2-arylethylamine
- Aralkylamine
- N-substituted imidazole
- Heteroaromatic compound
- Imidazole
- Azole
- Azacycle
- Organoheterocyclic compound
- Organopnictogen compound
- Hydrocarbon derivative
- Primary aliphatic amine
- Aromatic heteromonocyclic compound
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| Molecular Framework | Aromatic heteromonocyclic compounds |
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| External Descriptors | Not Available |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Not Available |
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| Role | Not Available |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Experimental Collision Cross Sections |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 1.49 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 7.8845 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 6.5 minutes | 32390414 | | AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid | 370.6 seconds | 40023050 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 332.9 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 272.2 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 57.0 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 177.5 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 62.0 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 266.1 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 224.0 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 934.0 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 512.6 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 35.1 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 522.6 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 188.1 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 255.3 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 769.0 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 665.7 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 292.6 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| 3-Methylhistamine,1TMS,isomer #1 | CN1C=NC=C1CCN[Si](C)(C)C | 1496.1 | Semi standard non polar | 33892256 | | 3-Methylhistamine,1TMS,isomer #1 | CN1C=NC=C1CCN[Si](C)(C)C | 1561.9 | Standard non polar | 33892256 | | 3-Methylhistamine,1TMS,isomer #1 | CN1C=NC=C1CCN[Si](C)(C)C | 1878.7 | Standard polar | 33892256 | | 3-Methylhistamine,2TMS,isomer #1 | CN1C=NC=C1CCN([Si](C)(C)C)[Si](C)(C)C | 1742.7 | Semi standard non polar | 33892256 | | 3-Methylhistamine,2TMS,isomer #1 | CN1C=NC=C1CCN([Si](C)(C)C)[Si](C)(C)C | 1777.3 | Standard non polar | 33892256 | | 3-Methylhistamine,2TMS,isomer #1 | CN1C=NC=C1CCN([Si](C)(C)C)[Si](C)(C)C | 1849.8 | Standard polar | 33892256 | | 3-Methylhistamine,1TBDMS,isomer #1 | CN1C=NC=C1CCN[Si](C)(C)C(C)(C)C | 1739.9 | Semi standard non polar | 33892256 | | 3-Methylhistamine,1TBDMS,isomer #1 | CN1C=NC=C1CCN[Si](C)(C)C(C)(C)C | 1801.0 | Standard non polar | 33892256 | | 3-Methylhistamine,1TBDMS,isomer #1 | CN1C=NC=C1CCN[Si](C)(C)C(C)(C)C | 1996.9 | Standard polar | 33892256 | | 3-Methylhistamine,2TBDMS,isomer #1 | CN1C=NC=C1CCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C | 2131.8 | Semi standard non polar | 33892256 | | 3-Methylhistamine,2TBDMS,isomer #1 | CN1C=NC=C1CCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C | 2202.8 | Standard non polar | 33892256 | | 3-Methylhistamine,2TBDMS,isomer #1 | CN1C=NC=C1CCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C | 2028.5 | Standard polar | 33892256 |
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| GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted GC-MS | Predicted GC-MS Spectrum - 3-Methylhistamine GC-MS (Non-derivatized) - 70eV, Positive | splash10-001j-9200000000-052f704135f11d74ed40 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Methylhistamine GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Methylhistamine GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Methylhistamine Quattro_QQQ 10V, Positive-QTOF (Annotated) | splash10-056s-2900000000-c9f454504e6359b0b0be | 2012-07-24 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Methylhistamine Quattro_QQQ 25V, Positive-QTOF (Annotated) | splash10-0002-9200000000-8ce6c84f30341c8124e9 | 2012-07-24 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Methylhistamine Quattro_QQQ 40V, Positive-QTOF (Annotated) | splash10-00lr-9000000000-dbef26b4250bbde784a8 | 2012-07-24 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Methylhistamine , positive-QTOF | splash10-004i-0900000000-05db0a907f55fd5697b3 | 2017-09-14 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Methylhistamine 35V, Positive-QTOF | splash10-004i-0900000000-6bb37dbd89e15ed1ff0b | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Methylhistamine 10V, Positive-QTOF | splash10-004i-1900000000-054aff5c788523f9fb69 | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Methylhistamine 35V, Positive-QTOF | splash10-004i-0900000000-b1a73061bf275ded0bb6 | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Methylhistamine 35V, Positive-QTOF | splash10-004i-0900000000-7f98177798dededd8b8a | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Methylhistamine 40V, Positive-QTOF | splash10-0fr2-9000000000-d746354f237ae0d5c8ca | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Methylhistamine 20V, Positive-QTOF | splash10-0002-9200000000-515b613508cc66073320 | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Methylhistamine 40V, Positive-QTOF | splash10-0002-9000000000-d86d2dcd3ee01a3bb1d1 | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Methylhistamine 10V, Positive-QTOF | splash10-004i-1900000000-0e1bd2d92202d959dd58 | 2021-09-20 | HMDB team, MONA | View Spectrum | | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Methylhistamine 20V, Positive-QTOF | splash10-0002-9200000000-f506556ec8dce3bed55d | 2021-09-20 | HMDB team, MONA | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Methylhistamine 10V, Positive-QTOF | splash10-056r-0900000000-70a4f63c7c70678531b6 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Methylhistamine 20V, Positive-QTOF | splash10-0a4i-3900000000-bb58b80ce0d729f81a6c | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Methylhistamine 40V, Positive-QTOF | splash10-014i-9000000000-863d517768f138904f02 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Methylhistamine 10V, Negative-QTOF | splash10-00di-1900000000-a6d65a6f86b3c40f4626 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Methylhistamine 20V, Negative-QTOF | splash10-00di-3900000000-58dfa354fec01badb28b | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Methylhistamine 40V, Negative-QTOF | splash10-0a6r-9100000000-601c15d8230e0983d2e9 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Methylhistamine 10V, Positive-QTOF | splash10-056r-2900000000-ab3814c48d66a74e0117 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Methylhistamine 20V, Positive-QTOF | splash10-0a59-8900000000-f5a1919f413b6efc109d | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Methylhistamine 40V, Positive-QTOF | splash10-05o3-9000000000-0b568a6f55699dc3d877 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Methylhistamine 10V, Negative-QTOF | splash10-00di-3900000000-14f3c97f00ccfa6fa446 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Methylhistamine 20V, Negative-QTOF | splash10-0603-9500000000-084b1cab57e4da1aac12 | 2021-09-22 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Methylhistamine 40V, Negative-QTOF | splash10-06r6-9000000000-56ef0c724afe8a89402b | 2021-09-22 | Wishart Lab | View Spectrum |
NMR Spectra| Spectrum Type | Description | Deposition Date | Source | View |
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| Experimental 1D NMR | 1H NMR Spectrum (1D, 600 MHz, H2O, experimental) | 2012-12-04 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | | Experimental 2D NMR | [1H, 13C]-HSQC NMR Spectrum (2D, 600 MHz, H2O, experimental) | 2012-12-05 | Wishart Lab | View Spectrum |
IR Spectra| Spectrum Type | Description | Deposition Date | Source | View |
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| Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-) | 2023-02-03 | FELIX lab | View Spectrum | | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+) | 2023-02-03 | FELIX lab | View Spectrum | | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+) | 2023-02-03 | FELIX lab | View Spectrum |
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